(82 nodes) Cysteine and methionine metabolism network (Streptomyces sp. Wb2n11)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_001049855_00746	Unannotated protein. (396 aa)
	GCA_001049855_00461	Unannotated protein. (477 aa)
	GCA_001049855_00465	Unannotated protein. (173 aa)
	GCA_001049855_00466	Unannotated protein. (240 aa)
	GCA_001049855_00587	Unannotated protein. (425 aa)
	GCA_001049855_00860	Unannotated protein. (135 aa)
	GCA_001049855_00960	Unannotated protein. (405 aa)
	GCA_001049855_01171	Unannotated protein. (462 aa)
	GCA_001049855_01271	Unannotated protein. (189 aa)
	GCA_001049855_01446	Unannotated protein. (305 aa)
	GCA_001049855_01530	Unannotated protein. (278 aa)
	GCA_001049855_01557	Unannotated protein. (399 aa)
	GCA_001049855_01558	Unannotated protein. (349 aa)
	GCA_001049855_01834	Unannotated protein. (368 aa)
	GCA_001049855_01844	Unannotated protein. (530 aa)
	GCA_001049855_01864	Unannotated protein. (293 aa)
	GCA_001049855_01888	Unannotated protein. (455 aa)
	GCA_001049855_01969	Unannotated protein. (241 aa)
	GCA_001049855_02040	Unannotated protein. (439 aa)
	GCA_001049855_02096	Unannotated protein. (240 aa)
	GCA_001049855_02139	Unannotated protein. (309 aa)
	GCA_001049855_02421	Unannotated protein. (381 aa)
	GCA_001049855_02552	Unannotated protein. (329 aa)
	GCA_001049855_02621	Unannotated protein. (342 aa)
	GCA_001049855_02718	Unannotated protein. (408 aa)
	GCA_001049855_03001	Unannotated protein. (405 aa)
	GCA_001049855_03080	Unannotated protein. (352 aa)
	GCA_001049855_03081	Unannotated protein. (423 aa)
	GCA_001049855_03112	Unannotated protein. (540 aa)
	GCA_001049855_03345	Unannotated protein. (379 aa)
	GCA_001049855_03550	Unannotated protein. (279 aa)
	GCA_001049855_03710	Unannotated protein. (363 aa)
	GCA_001049855_03825	Unannotated protein. (277 aa)
	GCA_001049855_03859	Unannotated protein. (297 aa)
	GCA_001049855_03934	Unannotated protein. (464 aa)
	GCA_001049855_03989	Unannotated protein. (485 aa)
	GCA_001049855_04002	Unannotated protein. (384 aa)
	GCA_001049855_04118	Unannotated protein. (398 aa)
	GCA_001049855_04119	Unannotated protein. (323 aa)
	GCA_001049855_04166	Unannotated protein. (288 aa)
	GCA_001049855_04288	Unannotated protein. (342 aa)
	GCA_001049855_04298	Unannotated protein. (351 aa)
	GCA_001049855_04470	Unannotated protein. (392 aa)
	GCA_001049855_04614	Unannotated protein. (158 aa)
	GCA_001049855_04667	Unannotated protein. (215 aa)
	GCA_001049855_05146	Unannotated protein. (208 aa)
	GCA_001049855_05281	Unannotated protein. (1171 aa)
	GCA_001049855_05426	Unannotated protein. (455 aa)
	GCA_001049855_05446	Unannotated protein. (400 aa)
	GCA_001049855_05532	Unannotated protein. (273 aa)
	GCA_001049855_05604	Unannotated protein. (407 aa)
	GCA_001049855_05739	Unannotated protein. (275 aa)
	GCA_001049855_05749	Unannotated protein. (135 aa)
	GCA_001049855_05760	Unannotated protein. (411 aa)
	GCA_001049855_06060	Unannotated protein. (254 aa)
	GCA_001049855_06215	Unannotated protein. (377 aa)
	GCA_001049855_06234	Unannotated protein. (344 aa)
	GCA_001049855_06238	Unannotated protein. (407 aa)
	GCA_001049855_06239	Unannotated protein. (355 aa)
	GCA_001049855_06240	Unannotated protein. (221 aa)
	GCA_001049855_06241	Unannotated protein. (187 aa)
	GCA_001049855_06242	Unannotated protein. (244 aa)
	GCA_001049855_06243	Unannotated protein. (272 aa)
	GCA_001049855_06312	Unannotated protein. (355 aa)
	GCA_001049855_06363	Unannotated protein. (407 aa)
	GCA_001049855_06719	Unannotated protein. (361 aa)
	GCA_001049855_06720	Unannotated protein. (75 aa)
	GCA_001049855_07076	Unannotated protein. (471 aa)
	GCA_001049855_07132	Unannotated protein. (138 aa)
	GCA_001049855_07219	Unannotated protein. (573 aa)
	GCA_001049855_07220	Unannotated protein. (155 aa)
	GCA_001049855_07580	Unannotated protein. (416 aa)
	GCA_001049855_07581	Unannotated protein. (320 aa)
	GCA_001049855_07582	Unannotated protein. (244 aa)
	GCA_001049855_07583	Unannotated protein. (439 aa)
	GCA_001049855_07584	Unannotated protein. (416 aa)
	GCA_001049855_07594	Unannotated protein. (318 aa)
	GCA_001049855_07599	Unannotated protein. (407 aa)
	GCA_001049855_07628	Unannotated protein. (418 aa)
	GCA_001049855_07631	Unannotated protein. (415 aa)
	GCA_001049855_07647	Unannotated protein. (89 aa)
	GCA_001049855_07695	Unannotated protein. (147 aa)

Your Current Organism:

Streptomyces sp. Wb2n11

NCBI taxonomy Id: 1030533
Other names: S. sp. Wb2n-11, Streptomyces sp. Wb2n-11

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_001049855_00461	GCA_001049855_01171	Unannotated protein.	Unannotated protein.	0.758
GCA_001049855_00461	GCA_001049855_03825	Unannotated protein.	Unannotated protein.	0.751
GCA_001049855_00461	GCA_001049855_04166	Unannotated protein.	Unannotated protein.	0.666
GCA_001049855_00461	GCA_001049855_05739	Unannotated protein.	Unannotated protein.	0.666
GCA_001049855_00461	GCA_001049855_06240	Unannotated protein.	Unannotated protein.	0.458
GCA_001049855_00461	GCA_001049855_06243	Unannotated protein.	Unannotated protein.	0.671
GCA_001049855_00465	GCA_001049855_00466	Unannotated protein.	Unannotated protein.	0.887
GCA_001049855_00465	GCA_001049855_02421	Unannotated protein.	Unannotated protein.	0.581
GCA_001049855_00465	GCA_001049855_03345	Unannotated protein.	Unannotated protein.	0.581
GCA_001049855_00465	GCA_001049855_05760	Unannotated protein.	Unannotated protein.	0.581
GCA_001049855_00466	GCA_001049855_00465	Unannotated protein.	Unannotated protein.	0.887
GCA_001049855_00466	GCA_001049855_02421	Unannotated protein.	Unannotated protein.	0.581
GCA_001049855_00466	GCA_001049855_03345	Unannotated protein.	Unannotated protein.	0.581
GCA_001049855_00466	GCA_001049855_05760	Unannotated protein.	Unannotated protein.	0.581
GCA_001049855_00587	GCA_001049855_00746	Unannotated protein.	Unannotated protein.	0.727
GCA_001049855_00587	GCA_001049855_02421	Unannotated protein.	Unannotated protein.	0.777
GCA_001049855_00587	GCA_001049855_04470	Unannotated protein.	Unannotated protein.	0.908
GCA_001049855_00587	GCA_001049855_05446	Unannotated protein.	Unannotated protein.	0.629
GCA_001049855_00587	GCA_001049855_05760	Unannotated protein.	Unannotated protein.	0.662
GCA_001049855_00587	GCA_001049855_06215	Unannotated protein.	Unannotated protein.	0.913