(86 nodes) Glycolysis / Gluconeogenesis network (Bradyrhizobium sp. ARR65)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000472385_00517	Unannotated protein. (470 aa)
	GCA_000472385_00081	Unannotated protein. (164 aa)
	GCA_000472385_00085	Unannotated protein. (472 aa)
	GCA_000472385_00426	Unannotated protein. (374 aa)
	GCA_000472385_00429	Unannotated protein. (361 aa)
	GCA_000472385_00508	Unannotated protein. (335 aa)
	GCA_000472385_00512	Unannotated protein. (314 aa)
	GCA_000472385_00513	Unannotated protein. (324 aa)
	GCA_000472385_00556	Unannotated protein. (951 aa)
	GCA_000472385_00561	Unannotated protein. (351 aa)
	GCA_000472385_00562	Unannotated protein. (615 aa)
	GCA_000472385_00778	Unannotated protein. (325 aa)
	GCA_000472385_00803	Unannotated protein. (445 aa)
	GCA_000472385_00886	Unannotated protein. (369 aa)
	GCA_000472385_01070	Unannotated protein. (366 aa)
	GCA_000472385_01072	Unannotated protein. (366 aa)
	GCA_000472385_01095	Unannotated protein. (209 aa)
	GCA_000472385_01106	Unannotated protein. (252 aa)
	GCA_000472385_01116	Unannotated protein. (427 aa)
	GCA_000472385_01122	Unannotated protein. (505 aa)
	GCA_000472385_01123	Unannotated protein. (340 aa)
	GCA_000472385_01124	Unannotated protein. (465 aa)
	GCA_000472385_01127	Unannotated protein. (454 aa)
	GCA_000472385_01128	Unannotated protein. (473 aa)
	GCA_000472385_01162	Unannotated protein. (271 aa)
	GCA_000472385_01262	Unannotated protein. (342 aa)
	GCA_000472385_01317	Unannotated protein. (659 aa)
	GCA_000472385_01363	Unannotated protein. (322 aa)
	GCA_000472385_01378	Unannotated protein. (709 aa)
	GCA_000472385_01417	Unannotated protein. (575 aa)
	GCA_000472385_01422	Unannotated protein. (369 aa)
	GCA_000472385_01551	Unannotated protein. (478 aa)
	GCA_000472385_01625	Unannotated protein. (535 aa)
	GCA_000472385_01892	Unannotated protein. (459 aa)
	GCA_000472385_01913	Unannotated protein. (332 aa)
	GCA_000472385_01926	Unannotated protein. (342 aa)
	GCA_000472385_01927	Unannotated protein. (355 aa)
	GCA_000472385_01928	Unannotated protein. (397 aa)
	GCA_000472385_01929	Unannotated protein. (335 aa)
	GCA_000472385_01936	Unannotated protein. (448 aa)
	GCA_000472385_01964	Unannotated protein. (416 aa)
	GCA_000472385_01988	Unannotated protein. (295 aa)
	GCA_000472385_02000	Unannotated protein. (408 aa)
	GCA_000472385_02266	Unannotated protein. (897 aa)
	GCA_000472385_02267	Unannotated protein. (327 aa)
	GCA_000472385_02338	Unannotated protein. (206 aa)
	GCA_000472385_02341	Unannotated protein. (226 aa)
	GCA_000472385_02436	Unannotated protein. (969 aa)
	GCA_000472385_03045	Unannotated protein. (593 aa)
	GCA_000472385_03256	Unannotated protein. (402 aa)
	GCA_000472385_03393	Unannotated protein. (495 aa)
	GCA_000472385_03510	Unannotated protein. (736 aa)
	GCA_000472385_03583	Unannotated protein. (499 aa)
	GCA_000472385_03597	Unannotated protein. (538 aa)
	GCA_000472385_03687	Unannotated protein. (537 aa)
	GCA_000472385_04014	Unannotated protein. (395 aa)
	GCA_000472385_04021	Unannotated protein. (381 aa)
	GCA_000472385_04047	Unannotated protein. (409 aa)
	GCA_000472385_04054	Unannotated protein. (333 aa)
	GCA_000472385_04143	Unannotated protein. (577 aa)
	GCA_000472385_04264	Unannotated protein. (353 aa)
	GCA_000472385_04533	Unannotated protein. (272 aa)
	GCA_000472385_04672	Unannotated protein. (326 aa)
	GCA_000472385_04745	Unannotated protein. (145 aa)
	GCA_000472385_04800	Unannotated protein. (571 aa)
	GCA_000472385_04854	Unannotated protein. (310 aa)
	GCA_000472385_04950	Unannotated protein. (498 aa)
	GCA_000472385_05239	Unannotated protein. (289 aa)
	GCA_000472385_05465	Unannotated protein. (409 aa)
	GCA_000472385_05554	Unannotated protein. (649 aa)
	GCA_000472385_05695	Unannotated protein. (305 aa)
	GCA_000472385_05810	Unannotated protein. (360 aa)
	GCA_000472385_05845	Unannotated protein. (466 aa)
	GCA_000472385_05885	Unannotated protein. (476 aa)
	GCA_000472385_05886	Unannotated protein. (788 aa)
	GCA_000472385_05909	Unannotated protein. (355 aa)
	GCA_000472385_06244	Unannotated protein. (207 aa)
	GCA_000472385_06650	Unannotated protein. (337 aa)
	GCA_000472385_06669	Unannotated protein. (355 aa)
	GCA_000472385_06692	Unannotated protein. (705 aa)
	GCA_000472385_06843	Unannotated protein. (360 aa)
	GCA_000472385_07319	Unannotated protein. (571 aa)
	GCA_000472385_07848	Unannotated protein. (476 aa)
	GCA_000472385_07854	Unannotated protein. (554 aa)
	GCA_000472385_07857	Unannotated protein. (168 aa)
	GCA_000472385_08100	Unannotated protein. (465 aa)

Your Current Organism:

Bradyrhizobium sp. ARR65

NCBI taxonomy Id: 1040989
Other names: B. sp. ARR65

Send network to Cytoscape

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000472385_00081	GCA_000472385_00561	Unannotated protein.	Unannotated protein.	0.555
GCA_000472385_00081	GCA_000472385_00562	Unannotated protein.	Unannotated protein.	0.566
GCA_000472385_00081	GCA_000472385_01317	Unannotated protein.	Unannotated protein.	0.514
GCA_000472385_00085	GCA_000472385_00429	Unannotated protein.	Unannotated protein.	0.899
GCA_000472385_00085	GCA_000472385_00508	Unannotated protein.	Unannotated protein.	0.870
GCA_000472385_00085	GCA_000472385_00556	Unannotated protein.	Unannotated protein.	0.988
GCA_000472385_00085	GCA_000472385_00561	Unannotated protein.	Unannotated protein.	0.845
GCA_000472385_00085	GCA_000472385_00562	Unannotated protein.	Unannotated protein.	0.889
GCA_000472385_00085	GCA_000472385_01070	Unannotated protein.	Unannotated protein.	0.464
GCA_000472385_00085	GCA_000472385_01106	Unannotated protein.	Unannotated protein.	0.896
GCA_000472385_00085	GCA_000472385_01116	Unannotated protein.	Unannotated protein.	0.989
GCA_000472385_00085	GCA_000472385_01123	Unannotated protein.	Unannotated protein.	0.817
GCA_000472385_00085	GCA_000472385_01124	Unannotated protein.	Unannotated protein.	0.887
GCA_000472385_00085	GCA_000472385_01317	Unannotated protein.	Unannotated protein.	0.449
GCA_000472385_00085	GCA_000472385_01551	Unannotated protein.	Unannotated protein.	0.799
GCA_000472385_00085	GCA_000472385_01926	Unannotated protein.	Unannotated protein.	0.809
GCA_000472385_00085	GCA_000472385_01927	Unannotated protein.	Unannotated protein.	0.900
GCA_000472385_00085	GCA_000472385_01928	Unannotated protein.	Unannotated protein.	0.878
GCA_000472385_00085	GCA_000472385_01929	Unannotated protein.	Unannotated protein.	0.871
GCA_000472385_00085	GCA_000472385_01988	Unannotated protein.	Unannotated protein.	0.520