(125 nodes) Small-subunit processome, and Protein of unknown function DUF1068 network (Malus baccata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C1H46_045172	Nrap_D5 domain-containing protein. (159 aa)
	C1H46_044963	Uncharacterized protein. (155 aa)
	C1H46_044295	Nop domain-containing protein. (553 aa)
	C1H46_043806	PINc domain-containing protein. (248 aa)
	C1H46_042675	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (863 aa)
	C1H46_042571	Nop domain-containing protein. (655 aa)
	C1H46_042300	Uncharacterized protein. (133 aa)
	C1H46_042058	Uncharacterized protein. (307 aa)
	C1H46_042059	Uncharacterized protein. (332 aa)
	C1H46_041789	Uncharacterized protein. (142 aa)
	C1H46_041720	Helicase C-terminal domain-containing protein. (1041 aa)
	C1H46_040389	Uncharacterized protein. (294 aa)
	C1H46_040077	RRP7 domain-containing protein. (299 aa)
	C1H46_039887	Uncharacterized protein. (317 aa)
	C1H46_039878	BP28CT domain-containing protein. (107 aa)
	C1H46_039740	KH_8 domain-containing protein. (170 aa)
	C1H46_039637	WD_REPEATS_REGION domain-containing protein. (539 aa)
	C1H46_039286	WD_REPEATS_REGION domain-containing protein. (523 aa)
	C1H46_039102	Uncharacterized protein. (520 aa)
	C1H46_038772	PINc domain-containing protein. (198 aa)
	C1H46_038296	WD_REPEATS_REGION domain-containing protein. (629 aa)
	C1H46_037916	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (228 aa)
	C1H46_036732	Uncharacterized protein; Belongs to the DEAD box helicase family. (490 aa)
	C1H46_036399	Uncharacterized protein. (165 aa)
	C1H46_036327	HA2 domain-containing protein. (101 aa)
	C1H46_036524	Uncharacterized protein. (268 aa)
	C1H46_036249	RRM domain-containing protein. (227 aa)
	C1H46_035424	Uncharacterized protein. (234 aa)
	C1H46_035146	Uncharacterized protein. (128 aa)
	C1H46_034442	Brix domain-containing protein. (293 aa)
	C1H46_034290	Uncharacterized protein. (678 aa)
	C1H46_033855	WD_REPEATS_REGION domain-containing protein. (873 aa)
	C1H46_032920	DRIM domain-containing protein. (2717 aa)
	C1H46_032470	S4 RNA-binding domain-containing protein. (182 aa)
	C1H46_032435	RRP7 domain-containing protein. (304 aa)
	C1H46_031992	Fcf2 domain-containing protein. (194 aa)
	C1H46_031544	Uncharacterized protein. (172 aa)
	C1H46_031468	Uncharacterized protein. (311 aa)
	C1H46_031000	Uncharacterized protein. (193 aa)
	C1H46_031001	Uncharacterized protein. (315 aa)
	C1H46_030844	Uncharacterized protein. (952 aa)
	C1H46_030923	Fcf2 domain-containing protein. (251 aa)
	C1H46_030566	WD_REPEATS_REGION domain-containing protein. (893 aa)
	C1H46_030296	Uncharacterized protein. (895 aa)
	C1H46_030170	Uncharacterized protein. (522 aa)
	C1H46_029563	Uncharacterized protein. (797 aa)
	C1H46_029057	Uncharacterized protein. (475 aa)
	C1H46_028879	Uncharacterized protein. (138 aa)
	C1H46_028872	Uncharacterized protein. (132 aa)
	C1H46_028882	Uncharacterized protein. (95 aa)
	C1H46_028765	Uncharacterized protein. (1495 aa)
	C1H46_028309	Uncharacterized protein. (172 aa)
	C1H46_028238	Uncharacterized protein. (84 aa)
	C1H46_027361	Uncharacterized protein. (167 aa)
	C1H46_025859	Uncharacterized protein. (439 aa)
	C1H46_025236	CBF domain-containing protein. (618 aa)
	C1H46_024443	WD_REPEATS_REGION domain-containing protein. (549 aa)
	C1H46_023632	Uncharacterized protein. (1019 aa)
	C1H46_021957	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (364 aa)
	C1H46_021748	WD_REPEATS_REGION domain-containing protein. (177 aa)
	C1H46_022010	WD_REPEATS_REGION domain-containing protein. (140 aa)
	C1H46_021491	Nop domain-containing protein. (550 aa)
	C1H46_021223	Uncharacterized protein. (639 aa)
	C1H46_021208	Nop domain-containing protein. (597 aa)
	C1H46_020798	Utp12 domain-containing protein. (287 aa)
	C1H46_020789	Uncharacterized protein. (343 aa)
	C1H46_020799	Uncharacterized protein. (80 aa)
	C1H46_020796	Uncharacterized protein. (402 aa)
	C1H46_020592	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (924 aa)
	C1H46_020568	Brix domain-containing protein. (260 aa)
	C1H46_020356	Uncharacterized protein. (65 aa)
	C1H46_020306	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (228 aa)
	C1H46_020242	Uncharacterized protein. (286 aa)
	C1H46_019930	WD_REPEATS_REGION domain-containing protein. (907 aa)
	C1H46_020015	Bms1-type G domain-containing protein. (1215 aa)
	C1H46_019684	Uncharacterized protein. (588 aa)
	C1H46_019395	WD_REPEATS_REGION domain-containing protein. (549 aa)
	C1H46_018688	KH_8 domain-containing protein. (175 aa)
	C1H46_017973	Uncharacterized protein. (613 aa)
	C1H46_017970	WD_REPEATS_REGION domain-containing protein. (887 aa)
	C1H46_017967	Uncharacterized protein. (369 aa)
	C1H46_017556	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (607 aa)
	C1H46_017259	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (207 aa)
	C1H46_016572	AATF-Che1 domain-containing protein. (95 aa)
	C1H46_016088	NUC153 domain-containing protein. (475 aa)
	C1H46_016089	Uncharacterized protein. (110 aa)
	C1H46_016038	Uncharacterized protein. (385 aa)
	C1H46_015808	BP28CT domain-containing protein. (2284 aa)
	C1H46_015460	Bms1-type G domain-containing protein. (1215 aa)
	C1H46_015403	BP28CT domain-containing protein. (826 aa)
	C1H46_014935	Uncharacterized protein. (308 aa)
	C1H46_014149	S4 RNA-binding domain-containing protein. (229 aa)
	C1H46_014077	GCP_N_terminal domain-containing protein. (1285 aa)
	C1H46_013537	Uncharacterized protein. (93 aa)
	C1H46_013211	AATF-Che1 domain-containing protein. (138 aa)
	C1H46_013047	Ribosomal_L7Ae domain-containing protein. (147 aa)
	C1H46_012885	Uncharacterized protein. (223 aa)
	C1H46_011737	Utp13 domain-containing protein. (143 aa)
	C1H46_011261	Uncharacterized protein. (234 aa)
	C1H46_010577	HA2 domain-containing protein. (103 aa)
	C1H46_009824	Uncharacterized protein. (288 aa)
	C1H46_008989	Uncharacterized protein. (751 aa)
	C1H46_008914	S1 motif domain-containing protein. (327 aa)
	C1H46_008720	Uncharacterized protein. (104 aa)
	C1H46_008555	Uncharacterized protein. (286 aa)
	C1H46_007797	WD_REPEATS_REGION domain-containing protein. (628 aa)
	C1H46_007828	WD_REPEATS_REGION domain-containing protein. (539 aa)
	C1H46_006835	Uncharacterized protein. (111 aa)
	C1H46_005827	WD_REPEATS_REGION domain-containing protein. (904 aa)
	C1H46_005338	AATF-Che1 domain-containing protein. (142 aa)
	C1H46_005354	WD_REPEATS_REGION domain-containing protein. (539 aa)
	C1H46_005015	Uncharacterized protein. (539 aa)
	C1H46_003691	Uncharacterized protein. (350 aa)
	C1H46_003701	Uncharacterized protein. (583 aa)
	C1H46_003517	Uncharacterized protein. (1937 aa)
	C1H46_003208	Uncharacterized protein. (154 aa)
	C1H46_003696	WD_REPEATS_REGION domain-containing protein. (824 aa)
	C1H46_002913	Ribosomal_L7Ae domain-containing protein. (193 aa)
	C1H46_002335	Uncharacterized protein. (378 aa)
	C1H46_001436	Uncharacterized protein. (126 aa)
	C1H46_001265	Uncharacterized protein. (536 aa)
	C1H46_000842	Uncharacterized protein. (292 aa)
	C1H46_000889	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (228 aa)
	C1H46_000518	CBF domain-containing protein. (647 aa)
	C1H46_000717	WD_REPEATS_REGION domain-containing protein. (561 aa)

Your Current Organism:

Malus baccata

NCBI taxonomy Id: 106549
Other names: M. baccata, Malus baccata (L.) Borkh., shan jing zi

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1H46_000518	C1H46_000717	A0A540NS90	A0A540NT12	CBF domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
C1H46_000518	C1H46_000842	A0A540NS90	A0A540NR63	CBF domain-containing protein.	Uncharacterized protein.	0.976
C1H46_000518	C1H46_000889	A0A540NS90	A0A540NR82	CBF domain-containing protein.	U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.	0.986
C1H46_000518	C1H46_001265	A0A540NS90	A0A540NQ77	CBF domain-containing protein.	Uncharacterized protein.	0.848
C1H46_000518	C1H46_001436	A0A540NS90	A0A540NPV7	CBF domain-containing protein.	Uncharacterized protein.	0.979
C1H46_000518	C1H46_002335	A0A540NS90	A0A540NLN0	CBF domain-containing protein.	Uncharacterized protein.	0.989
C1H46_000518	C1H46_002913	A0A540NS90	A0A540NKH9	CBF domain-containing protein.	Ribosomal_L7Ae domain-containing protein.	0.933
C1H46_000518	C1H46_003208	A0A540NS90	A0A540NJH9	CBF domain-containing protein.	Uncharacterized protein.	0.993
C1H46_000518	C1H46_003517	A0A540NS90	A0A540NIE3	CBF domain-containing protein.	Uncharacterized protein.	0.997
C1H46_000518	C1H46_003691	A0A540NS90	A0A540NIB6	CBF domain-containing protein.	Uncharacterized protein.	0.994
C1H46_000518	C1H46_003696	A0A540NS90	A0A540NJJ3	CBF domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.996
C1H46_000518	C1H46_003701	A0A540NS90	A0A540NIC5	CBF domain-containing protein.	Uncharacterized protein.	0.980
C1H46_000518	C1H46_005015	A0A540NS90	A0A540NEC1	CBF domain-containing protein.	Uncharacterized protein.	0.848
C1H46_000518	C1H46_005338	A0A540NS90	A0A540ND34	CBF domain-containing protein.	AATF-Che1 domain-containing protein.	0.939
C1H46_000518	C1H46_005354	A0A540NS90	A0A540ND64	CBF domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.993
C1H46_000518	C1H46_005827	A0A540NS90	A0A540NBW0	CBF domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.991
C1H46_000518	C1H46_006835	A0A540NS90	A0A540N918	CBF domain-containing protein.	Uncharacterized protein.	0.988
C1H46_000518	C1H46_007797	A0A540NS90	A0A540N687	CBF domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.988
C1H46_000518	C1H46_007828	A0A540NS90	A0A540N6C3	CBF domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.993
C1H46_000518	C1H46_008555	A0A540NS90	A0A540N493	CBF domain-containing protein.	Uncharacterized protein.	0.979