(20 nodes) Mixed, incl. MCAfunc domain, and Dormancy/auxin associated protein network (Malus baccata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C1H46_044840	Uncharacterized protein. (568 aa)
	C1H46_044325	Uncharacterized protein. (655 aa)
	C1H46_042754	Uncharacterized protein. (531 aa)
	C1H46_041861	Uncharacterized protein. (177 aa)
	C1H46_041381	Uncharacterized protein. (582 aa)
	C1H46_039011	Uncharacterized protein. (279 aa)
	C1H46_037699	Uncharacterized protein. (379 aa)
	C1H46_032709	HMA domain-containing protein. (180 aa)
	C1H46_031067	Uncharacterized protein. (121 aa)
	C1H46_028648	Uncharacterized protein. (313 aa)
	C1H46_025462	Uncharacterized protein. (477 aa)
	C1H46_020722	Uncharacterized protein. (400 aa)
	C1H46_020723	PMR5N domain-containing protein. (492 aa)
	C1H46_020658	Uncharacterized protein. (147 aa)
	C1H46_018805	PMR5N domain-containing protein. (330 aa)
	C1H46_012301	Uncharacterized protein. (334 aa)
	C1H46_009305	Uncharacterized protein. (176 aa)
	C1H46_005677	Uncharacterized protein. (119 aa)
	C1H46_002905	Uncharacterized protein. (381 aa)
	C1H46_001083	RAP domain-containing protein. (698 aa)

Your Current Organism:

Malus baccata

NCBI taxonomy Id: 106549
Other names: M. baccata, Malus baccata (L.) Borkh., shan jing zi

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1H46_001083	C1H46_005677	A0A540NQG2	A0A540NDL5	RAP domain-containing protein.	Uncharacterized protein.	0.477
C1H46_001083	C1H46_012301	A0A540NQG2	A0A540MV12	RAP domain-containing protein.	Uncharacterized protein.	0.505
C1H46_001083	C1H46_020658	A0A540NQG2	A0A540M5G2	RAP domain-containing protein.	Uncharacterized protein.	0.419
C1H46_001083	C1H46_020722	A0A540NQG2	A0A540M4U2	RAP domain-containing protein.	Uncharacterized protein.	0.450
C1H46_001083	C1H46_020723	A0A540NQG2	A0A540M5C3	RAP domain-containing protein.	PMR5N domain-containing protein.	0.445
C1H46_001083	C1H46_028648	A0A540NQG2	A0A540LHD4	RAP domain-containing protein.	Uncharacterized protein.	0.471
C1H46_001083	C1H46_031067	A0A540NQG2	A0A540LA53	RAP domain-containing protein.	Uncharacterized protein.	0.465
C1H46_001083	C1H46_037699	A0A540NQG2	A0A540KRB3	RAP domain-containing protein.	Uncharacterized protein.	0.477
C1H46_001083	C1H46_039011	A0A540NQG2	A0A540KN83	RAP domain-containing protein.	Uncharacterized protein.	0.524
C1H46_001083	C1H46_041381	A0A540NQG2	A0A540KFX4	RAP domain-containing protein.	Uncharacterized protein.	0.472
C1H46_001083	C1H46_044325	A0A540NQG2	A0A540K8B0	RAP domain-containing protein.	Uncharacterized protein.	0.464
C1H46_002905	C1H46_005677	A0A540NLZ3	A0A540NDL5	Uncharacterized protein.	Uncharacterized protein.	0.520
C1H46_002905	C1H46_009305	A0A540NLZ3	A0A540N3N1	Uncharacterized protein.	Uncharacterized protein.	0.470
C1H46_002905	C1H46_012301	A0A540NLZ3	A0A540MV12	Uncharacterized protein.	Uncharacterized protein.	0.507
C1H46_002905	C1H46_018805	A0A540NLZ3	A0A540MA22	Uncharacterized protein.	PMR5N domain-containing protein.	0.492
C1H46_002905	C1H46_020658	A0A540NLZ3	A0A540M5G2	Uncharacterized protein.	Uncharacterized protein.	0.445
C1H46_002905	C1H46_020722	A0A540NLZ3	A0A540M4U2	Uncharacterized protein.	Uncharacterized protein.	0.487
C1H46_002905	C1H46_020723	A0A540NLZ3	A0A540M5C3	Uncharacterized protein.	PMR5N domain-containing protein.	0.488
C1H46_002905	C1H46_025462	A0A540NLZ3	A0A540LR73	Uncharacterized protein.	Uncharacterized protein.	0.501
C1H46_002905	C1H46_028648	A0A540NLZ3	A0A540LHD4	Uncharacterized protein.	Uncharacterized protein.	0.554