(6 nodes) Mixed, incl. MCAfunc domain, and Plastid-encoded plastid RNA polymerase complex network (Malus baccata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C1H46_044840	Uncharacterized protein. (568 aa)
	C1H46_044325	Uncharacterized protein. (655 aa)
	C1H46_031067	Uncharacterized protein. (121 aa)
	C1H46_028648	Uncharacterized protein. (313 aa)
	C1H46_020722	Uncharacterized protein. (400 aa)
	C1H46_012301	Uncharacterized protein. (334 aa)

Your Current Organism:

Malus baccata

NCBI taxonomy Id: 106549
Other names: M. baccata, Malus baccata (L.) Borkh., shan jing zi

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C1H46_012301	C1H46_020722	A0A540MV12	A0A540M4U2	Uncharacterized protein.	Uncharacterized protein.	0.525
C1H46_012301	C1H46_028648	A0A540MV12	A0A540LHD4	Uncharacterized protein.	Uncharacterized protein.	0.529
C1H46_012301	C1H46_031067	A0A540MV12	A0A540LA53	Uncharacterized protein.	Uncharacterized protein.	0.514
C1H46_012301	C1H46_044325	A0A540MV12	A0A540K8B0	Uncharacterized protein.	Uncharacterized protein.	0.702
C1H46_012301	C1H46_044840	A0A540MV12	A0A540K5Y7	Uncharacterized protein.	Uncharacterized protein.	0.507
C1H46_020722	C1H46_012301	A0A540M4U2	A0A540MV12	Uncharacterized protein.	Uncharacterized protein.	0.525
C1H46_020722	C1H46_028648	A0A540M4U2	A0A540LHD4	Uncharacterized protein.	Uncharacterized protein.	0.534
C1H46_020722	C1H46_031067	A0A540M4U2	A0A540LA53	Uncharacterized protein.	Uncharacterized protein.	0.518
C1H46_020722	C1H46_044325	A0A540M4U2	A0A540K8B0	Uncharacterized protein.	Uncharacterized protein.	0.505
C1H46_020722	C1H46_044840	A0A540M4U2	A0A540K5Y7	Uncharacterized protein.	Uncharacterized protein.	0.490
C1H46_028648	C1H46_012301	A0A540LHD4	A0A540MV12	Uncharacterized protein.	Uncharacterized protein.	0.529
C1H46_028648	C1H46_020722	A0A540LHD4	A0A540M4U2	Uncharacterized protein.	Uncharacterized protein.	0.534
C1H46_028648	C1H46_031067	A0A540LHD4	A0A540LA53	Uncharacterized protein.	Uncharacterized protein.	0.534
C1H46_028648	C1H46_044325	A0A540LHD4	A0A540K8B0	Uncharacterized protein.	Uncharacterized protein.	0.513
C1H46_028648	C1H46_044840	A0A540LHD4	A0A540K5Y7	Uncharacterized protein.	Uncharacterized protein.	0.563
C1H46_031067	C1H46_012301	A0A540LA53	A0A540MV12	Uncharacterized protein.	Uncharacterized protein.	0.514
C1H46_031067	C1H46_020722	A0A540LA53	A0A540M4U2	Uncharacterized protein.	Uncharacterized protein.	0.518
C1H46_031067	C1H46_028648	A0A540LA53	A0A540LHD4	Uncharacterized protein.	Uncharacterized protein.	0.534
C1H46_031067	C1H46_044325	A0A540LA53	A0A540K8B0	Uncharacterized protein.	Uncharacterized protein.	0.504
C1H46_031067	C1H46_044840	A0A540LA53	A0A540K5Y7	Uncharacterized protein.	Uncharacterized protein.	0.526