(41 nodes) Citrate cycle (TCA cycle), and Glycine metabolic process network (Hymenobacter norwichensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000420705_00356	Unannotated protein. (126 aa)
	GCA_000420705_00359	Unannotated protein. (756 aa)
	GCA_000420705_01034	Unannotated protein. (366 aa)
	GCA_000420705_01296	Unannotated protein. (327 aa)
	GCA_000420705_01302	Unannotated protein. (410 aa)
	GCA_000420705_01389	Unannotated protein. (466 aa)
	GCA_000420705_01561	Unannotated protein. (429 aa)
	GCA_000420705_01763	Unannotated protein. (409 aa)
	GCA_000420705_01776	Unannotated protein. (764 aa)
	GCA_000420705_01923	Unannotated protein. (504 aa)
	GCA_000420705_01978	Unannotated protein. (352 aa)
	GCA_000420705_02009	Unannotated protein. (806 aa)
	GCA_000420705_02042	Unannotated protein. (492 aa)
	GCA_000420705_02217	Unannotated protein. (460 aa)
	GCA_000420705_02390	Unannotated protein. (399 aa)
	GCA_000420705_02457	Unannotated protein. (464 aa)
	GCA_000420705_02487	Unannotated protein. (313 aa)
	GCA_000420705_02627	Unannotated protein. (309 aa)
	GCA_000420705_02785	Unannotated protein. (352 aa)
	GCA_000420705_02789	Unannotated protein. (466 aa)
	GCA_000420705_02854	Unannotated protein. (420 aa)
	GCA_000420705_02863	Unannotated protein. (411 aa)
	GCA_000420705_02926	Unannotated protein. (556 aa)
	GCA_000420705_03005	Unannotated protein. (368 aa)
	GCA_000420705_03430	Unannotated protein. (541 aa)
	GCA_000420705_03570	Unannotated protein. (698 aa)
	GCA_000420705_03617	Unannotated protein. (468 aa)
	GCA_000420705_03748	Unannotated protein. (662 aa)
	GCA_000420705_03761	Unannotated protein. (971 aa)
	GCA_000420705_03774	Unannotated protein. (948 aa)
	GCA_000420705_03775	Unannotated protein. (557 aa)
	GCA_000420705_03785	Unannotated protein. (468 aa)
	GCA_000420705_04164	Unannotated protein. (392 aa)
	GCA_000420705_04225	Unannotated protein. (430 aa)
	GCA_000420705_04231	Unannotated protein. (278 aa)
	GCA_000420705_04272	Unannotated protein. (467 aa)
	GCA_000420705_04392	Unannotated protein. (183 aa)
	GCA_000420705_04397	Unannotated protein. (334 aa)
	GCA_000420705_04574	Unannotated protein. (537 aa)
	GCA_000420705_04587	Unannotated protein. (585 aa)
	GCA_000420705_04647	Unannotated protein. (368 aa)

Your Current Organism:

Hymenobacter norwichensis

NCBI taxonomy Id: 1121957
Other names: H. norwichensis DSM 15439, Hymenobacter norwichensis DSM 15439

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000420705_00356	GCA_000420705_00359	Unannotated protein.	Unannotated protein.	0.587
GCA_000420705_00356	GCA_000420705_01034	Unannotated protein.	Unannotated protein.	0.999
GCA_000420705_00356	GCA_000420705_01296	Unannotated protein.	Unannotated protein.	0.730
GCA_000420705_00356	GCA_000420705_02009	Unannotated protein.	Unannotated protein.	0.908
GCA_000420705_00356	GCA_000420705_02042	Unannotated protein.	Unannotated protein.	0.782
GCA_000420705_00356	GCA_000420705_02217	Unannotated protein.	Unannotated protein.	0.865
GCA_000420705_00356	GCA_000420705_02457	Unannotated protein.	Unannotated protein.	0.973
GCA_000420705_00356	GCA_000420705_02789	Unannotated protein.	Unannotated protein.	0.880
GCA_000420705_00356	GCA_000420705_02926	Unannotated protein.	Unannotated protein.	0.870
GCA_000420705_00356	GCA_000420705_03570	Unannotated protein.	Unannotated protein.	0.908
GCA_000420705_00356	GCA_000420705_03748	Unannotated protein.	Unannotated protein.	0.908
GCA_000420705_00356	GCA_000420705_03761	Unannotated protein.	Unannotated protein.	0.999
GCA_000420705_00356	GCA_000420705_03774	Unannotated protein.	Unannotated protein.	0.915
GCA_000420705_00356	GCA_000420705_03775	Unannotated protein.	Unannotated protein.	0.782
GCA_000420705_00356	GCA_000420705_03785	Unannotated protein.	Unannotated protein.	0.974
GCA_000420705_00356	GCA_000420705_04164	Unannotated protein.	Unannotated protein.	0.709
GCA_000420705_00356	GCA_000420705_04225	Unannotated protein.	Unannotated protein.	0.978
GCA_000420705_00356	GCA_000420705_04392	Unannotated protein.	Unannotated protein.	0.782
GCA_000420705_00356	GCA_000420705_04587	Unannotated protein.	Unannotated protein.	0.782
GCA_000420705_00359	GCA_000420705_00356	Unannotated protein.	Unannotated protein.	0.587