(34 nodes) 2-Oxocarboxylic acid metabolism network (Hymenobacter norwichensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000420705_01763	Unannotated protein. (409 aa)
	GCA_000420705_00509	Unannotated protein. (331 aa)
	GCA_000420705_01022	Unannotated protein. (354 aa)
	GCA_000420705_01302	Unannotated protein. (410 aa)
	GCA_000420705_01429	Unannotated protein. (426 aa)
	GCA_000420705_01445	Unannotated protein. (413 aa)
	GCA_000420705_01561	Unannotated protein. (429 aa)
	GCA_000420705_01627	Unannotated protein. (388 aa)
	GCA_000420705_01628	Unannotated protein. (464 aa)
	GCA_000420705_01629	Unannotated protein. (198 aa)
	GCA_000420705_01630	Unannotated protein. (374 aa)
	GCA_000420705_01632	Unannotated protein. (300 aa)
	GCA_000420705_01633	Unannotated protein. (572 aa)
	GCA_000420705_01634	Unannotated protein. (585 aa)
	GCA_000420705_01635	Unannotated protein. (202 aa)
	GCA_000420705_01636	Unannotated protein. (355 aa)
	GCA_000420705_01705	Unannotated protein. (172 aa)
	GCA_000420705_01761	Unannotated protein. (459 aa)
	GCA_000420705_01776	Unannotated protein. (764 aa)
	GCA_000420705_01866	Unannotated protein. (456 aa)
	GCA_000420705_01902	Unannotated protein. (234 aa)
	GCA_000420705_02448	Unannotated protein. (387 aa)
	GCA_000420705_02449	Unannotated protein. (326 aa)
	GCA_000420705_02451	Unannotated protein. (193 aa)
	GCA_000420705_02452	Unannotated protein. (260 aa)
	GCA_000420705_02453	Unannotated protein. (356 aa)
	GCA_000420705_02731	Unannotated protein. (491 aa)
	GCA_000420705_02854	Unannotated protein. (420 aa)
	GCA_000420705_02863	Unannotated protein. (411 aa)
	GCA_000420705_03199	Unannotated protein. (243 aa)
	GCA_000420705_03879	Unannotated protein. (162 aa)
	GCA_000420705_04349	Unannotated protein. (171 aa)
	GCA_000420705_04397	Unannotated protein. (334 aa)
	GCA_000420705_04647	Unannotated protein. (368 aa)

Your Current Organism:

Hymenobacter norwichensis

NCBI taxonomy Id: 1121957
Other names: H. norwichensis DSM 15439, Hymenobacter norwichensis DSM 15439

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000420705_00509	GCA_000420705_01429	Unannotated protein.	Unannotated protein.	0.982
GCA_000420705_00509	GCA_000420705_01633	Unannotated protein.	Unannotated protein.	0.427
GCA_000420705_00509	GCA_000420705_01635	Unannotated protein.	Unannotated protein.	0.692
GCA_000420705_00509	GCA_000420705_01761	Unannotated protein.	Unannotated protein.	0.972
GCA_000420705_00509	GCA_000420705_01763	Unannotated protein.	Unannotated protein.	0.437
GCA_000420705_00509	GCA_000420705_01866	Unannotated protein.	Unannotated protein.	0.972
GCA_000420705_00509	GCA_000420705_02449	Unannotated protein.	Unannotated protein.	0.496
GCA_000420705_00509	GCA_000420705_04397	Unannotated protein.	Unannotated protein.	0.434
GCA_000420705_01022	GCA_000420705_01627	Unannotated protein.	Unannotated protein.	0.947
GCA_000420705_01022	GCA_000420705_01633	Unannotated protein.	Unannotated protein.	0.981
GCA_000420705_01022	GCA_000420705_01634	Unannotated protein.	Unannotated protein.	0.517
GCA_000420705_01022	GCA_000420705_01635	Unannotated protein.	Unannotated protein.	0.558
GCA_000420705_01022	GCA_000420705_03199	Unannotated protein.	Unannotated protein.	0.522
GCA_000420705_01302	GCA_000420705_01445	Unannotated protein.	Unannotated protein.	0.872
GCA_000420705_01302	GCA_000420705_01561	Unannotated protein.	Unannotated protein.	0.812
GCA_000420705_01302	GCA_000420705_01628	Unannotated protein.	Unannotated protein.	0.442
GCA_000420705_01302	GCA_000420705_01630	Unannotated protein.	Unannotated protein.	0.738
GCA_000420705_01302	GCA_000420705_01763	Unannotated protein.	Unannotated protein.	0.872
GCA_000420705_01302	GCA_000420705_01776	Unannotated protein.	Unannotated protein.	0.985
GCA_000420705_01302	GCA_000420705_02854	Unannotated protein.	Unannotated protein.	0.876