(19 nodes) Structural constituent of ribosome network (Rubritepida flocculans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000425365_00747	Unannotated protein. (154 aa)
	GCA_000425365_00748	Unannotated protein. (92 aa)
	GCA_000425365_01124	Unannotated protein. (213 aa)
	GCA_000425365_01218	Unannotated protein. (111 aa)
	GCA_000425365_01469	Unannotated protein. (164 aa)
	GCA_000425365_01470	Unannotated protein. (156 aa)
	GCA_000425365_02142	Unannotated protein. (89 aa)
	GCA_000425365_02876	Unannotated protein. (259 aa)
	GCA_000425365_03167	Unannotated protein. (102 aa)
	GCA_000425365_03177	Unannotated protein. (87 aa)
	GCA_000425365_03181	Unannotated protein. (101 aa)
	GCA_000425365_03182	Unannotated protein. (132 aa)
	GCA_000425365_03183	Unannotated protein. (177 aa)
	GCA_000425365_03185	Unannotated protein. (208 aa)
	GCA_000425365_03190	Unannotated protein. (125 aa)
	GCA_000425365_03191	Unannotated protein. (132 aa)
	GCA_000425365_03193	Unannotated protein. (140 aa)
	GCA_000425365_03550	Unannotated protein. (158 aa)
	GCA_000425365_03551	Unannotated protein. (123 aa)

Your Current Organism:

Rubritepida flocculans

NCBI taxonomy Id: 1123072
Other names: R. flocculans DSM 14296, Rubritepida flocculans DSM 14296

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000425365_00747	GCA_000425365_00748	Unannotated protein.	Unannotated protein.	0.999
GCA_000425365_00747	GCA_000425365_01124	Unannotated protein.	Unannotated protein.	0.999
GCA_000425365_00747	GCA_000425365_01218	Unannotated protein.	Unannotated protein.	0.999
GCA_000425365_00747	GCA_000425365_01469	Unannotated protein.	Unannotated protein.	0.999
GCA_000425365_00747	GCA_000425365_01470	Unannotated protein.	Unannotated protein.	0.998
GCA_000425365_00747	GCA_000425365_02142	Unannotated protein.	Unannotated protein.	0.999
GCA_000425365_00747	GCA_000425365_02876	Unannotated protein.	Unannotated protein.	0.999
GCA_000425365_00747	GCA_000425365_03167	Unannotated protein.	Unannotated protein.	0.999
GCA_000425365_00747	GCA_000425365_03177	Unannotated protein.	Unannotated protein.	0.999
GCA_000425365_00747	GCA_000425365_03181	Unannotated protein.	Unannotated protein.	0.999
GCA_000425365_00747	GCA_000425365_03182	Unannotated protein.	Unannotated protein.	0.999
GCA_000425365_00747	GCA_000425365_03183	Unannotated protein.	Unannotated protein.	0.998
GCA_000425365_00747	GCA_000425365_03185	Unannotated protein.	Unannotated protein.	0.999
GCA_000425365_00747	GCA_000425365_03190	Unannotated protein.	Unannotated protein.	0.999
GCA_000425365_00747	GCA_000425365_03191	Unannotated protein.	Unannotated protein.	0.999
GCA_000425365_00747	GCA_000425365_03193	Unannotated protein.	Unannotated protein.	0.998
GCA_000425365_00747	GCA_000425365_03550	Unannotated protein.	Unannotated protein.	0.999
GCA_000425365_00747	GCA_000425365_03551	Unannotated protein.	Unannotated protein.	0.999
GCA_000425365_00748	GCA_000425365_00747	Unannotated protein.	Unannotated protein.	0.999
GCA_000425365_00748	GCA_000425365_01124	Unannotated protein.	Unannotated protein.	0.999