5 items (Macrophomina phaseolina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MPH_02714	Uncharacterized protein. (347 aa)
	MPH_11420	Uncharacterized protein. (633 aa)
	MPH_11238	WD_REPEATS_REGION domain-containing protein. (1364 aa)
	MPH_00822	WD_REPEATS_REGION domain-containing protein. (501 aa)
	MPH_01669	Uncharacterized protein. (726 aa)

Your Current Organism:

Macrophomina phaseolina

NCBI taxonomy Id: 1126212
Other names: M. phaseolina MS6, Macrophomina phaseolina MS6, Macrophomina phaseolina str. MS6, Macrophomina phaseolina strain MS6

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MPH_00822	MPH_11238	K2SAI5	K2S4T3	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
MPH_01669	MPH_11420	K2SX03	K2S3V8	Uncharacterized protein.	Uncharacterized protein.	0.400
MPH_11238	MPH_00822	K2S4T3	K2SAI5	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
MPH_11238	MPH_11420	K2S4T3	K2S3V8	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.403
MPH_11420	MPH_01669	K2S3V8	K2SX03	Uncharacterized protein.	Uncharacterized protein.	0.400
MPH_11420	MPH_11238	K2S3V8	K2S4T3	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.403