(13 nodes) Phosphopantetheine binding, and Ketoacyl-synthetase C-terminal extension network (Nocardia uniformis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_001613345_01107	Unannotated protein. (430 aa)
	GCA_001613345_01358	Unannotated protein. (2645 aa)
	GCA_001613345_01948	Unannotated protein. (1033 aa)
	GCA_001613345_02381	Unannotated protein. (3381 aa)
	GCA_001613345_02636	Unannotated protein. (63 aa)
	GCA_001613345_02734	Unannotated protein. (1335 aa)
	GCA_001613345_03123	Unannotated protein. (3116 aa)
	GCA_001613345_03646	Unannotated protein. (5487 aa)
	GCA_001613345_03679	Unannotated protein. (1555 aa)
	GCA_001613345_04253	Unannotated protein. (4830 aa)
	GCA_001613345_04668	Unannotated protein. (4408 aa)
	GCA_001613345_06683	Unannotated protein. (566 aa)
	GCA_001613345_06802	Unannotated protein. (2244 aa)

Your Current Organism:

Nocardia uniformis

NCBI taxonomy Id: 1210100
Other names: N. uniformis NBRC 13702, Nocardia uniformis NBRC 13702

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_001613345_01107	GCA_001613345_01358	Unannotated protein.	Unannotated protein.	0.999
GCA_001613345_01107	GCA_001613345_01948	Unannotated protein.	Unannotated protein.	0.998
GCA_001613345_01107	GCA_001613345_02381	Unannotated protein.	Unannotated protein.	0.999
GCA_001613345_01107	GCA_001613345_02636	Unannotated protein.	Unannotated protein.	0.999
GCA_001613345_01107	GCA_001613345_02734	Unannotated protein.	Unannotated protein.	0.999
GCA_001613345_01107	GCA_001613345_03123	Unannotated protein.	Unannotated protein.	0.999
GCA_001613345_01107	GCA_001613345_03646	Unannotated protein.	Unannotated protein.	0.999
GCA_001613345_01107	GCA_001613345_03679	Unannotated protein.	Unannotated protein.	0.999
GCA_001613345_01107	GCA_001613345_04253	Unannotated protein.	Unannotated protein.	0.999
GCA_001613345_01107	GCA_001613345_04668	Unannotated protein.	Unannotated protein.	0.999
GCA_001613345_01107	GCA_001613345_06683	Unannotated protein.	Unannotated protein.	0.999
GCA_001613345_01107	GCA_001613345_06802	Unannotated protein.	Unannotated protein.	0.999
GCA_001613345_01358	GCA_001613345_01107	Unannotated protein.	Unannotated protein.	0.999
GCA_001613345_01358	GCA_001613345_01948	Unannotated protein.	Unannotated protein.	0.998
GCA_001613345_01358	GCA_001613345_02381	Unannotated protein.	Unannotated protein.	0.999
GCA_001613345_01358	GCA_001613345_02636	Unannotated protein.	Unannotated protein.	0.999
GCA_001613345_01358	GCA_001613345_02734	Unannotated protein.	Unannotated protein.	0.998
GCA_001613345_01358	GCA_001613345_03123	Unannotated protein.	Unannotated protein.	0.999
GCA_001613345_01358	GCA_001613345_03646	Unannotated protein.	Unannotated protein.	0.998
GCA_001613345_01358	GCA_001613345_03679	Unannotated protein.	Unannotated protein.	0.999