STRINGSTRING
GCA_000497835_00044 GCA_000497835_00044 nicP_1 nicP_1 GCA_000497835_00650 GCA_000497835_00650 GCA_000497835_00680 GCA_000497835_00680 zraS_2 zraS_2 GCA_000497835_01328 GCA_000497835_01328 nicP_4 nicP_4 nicP_5 nicP_5 GCA_000497835_01936 GCA_000497835_01936 GCA_000497835_02108 GCA_000497835_02108 GCA_000497835_02250 GCA_000497835_02250 skp skp alg8 alg8 GCA_000497835_02633 GCA_000497835_02633 algK algK algE algE algG algG algX algX algL algL patA_1 patA_1 algJ_1 algJ_1 GCA_000497835_02641 GCA_000497835_02641 pagL pagL nicP_6 nicP_6 nicP_7 nicP_7 GCA_000497835_03399 GCA_000497835_03399 GCA_000497835_03402 GCA_000497835_03402 GCA_000497835_03413 GCA_000497835_03413 ygiF ygiF nicP_8 nicP_8 GCA_000497835_03837 GCA_000497835_03837 GCA_000497835_04503 GCA_000497835_04503 GCA_000497835_04757 GCA_000497835_04757 GCA_000497835_04758 GCA_000497835_04758 oprD_5 oprD_5
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
GCA_000497835_00044Hypothetical protein. (235 aa)
nicP_1Porin-like protein NicP. (444 aa)
GCA_000497835_00650Hypothetical protein. (123 aa)
GCA_000497835_00680Hypothetical protein. (176 aa)
zraS_2Sensor protein ZraS. (539 aa)
GCA_000497835_01328Hypothetical protein. (448 aa)
nicP_4Porin-like protein NicP. (438 aa)
nicP_5Porin-like protein NicP. (415 aa)
GCA_000497835_01936Hypothetical protein. (174 aa)
GCA_000497835_02108Hypothetical protein. (263 aa)
GCA_000497835_02250Hypothetical protein. (236 aa)
skpChaperone protein Skp. (145 aa)
alg8Mannuronan synthase. (493 aa)
GCA_000497835_02633Mannuronan synthase. (388 aa)
algKAlginate biosynthesis protein AlgK. (472 aa)
algEAlginate production protein AlgE. (492 aa)
algGPoly(beta-D-mannuronate) C5 epimerase. (530 aa)
algXAlginate biosynthesis protein AlgX. (483 aa)
algLAlginate lyase. (375 aa)
patA_1Peptidoglycan O-acetyltransferase. (516 aa)
algJ_1Putative alginate O-acetylase AlgJ. (382 aa)
GCA_000497835_02641Hypothetical protein. (216 aa)
pagLLipid A deacylase PagL. (175 aa)
nicP_6Porin-like protein NicP. (440 aa)
nicP_7Porin-like protein NicP. (415 aa)
GCA_000497835_03399Hypothetical protein. (506 aa)
GCA_000497835_03402Hypothetical protein. (233 aa)
GCA_000497835_03413Hypothetical protein. (248 aa)
ygiFInorganic triphosphatase. (455 aa)
nicP_8Porin-like protein NicP. (456 aa)
GCA_000497835_03837Putative membrane protein. (268 aa)
GCA_000497835_04503Hypothetical protein. (99 aa)
GCA_000497835_04757Hypothetical protein. (150 aa)
GCA_000497835_04758Hypothetical protein. (147 aa)
oprD_5Porin D. (446 aa)
Your Current Organism:
gamma proteobacterium L18
NCBI taxonomy Id: 1229486
Other names: g. proteobacterium L18
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