40 items (Fusarium oxysporum f. sp. cubense race 4)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	FOC4_g10012709	Uncharacterized protein. (649 aa)
	FOC4_g10012654	54S ribosomal protein L33, mitochondrial; Belongs to the universal ribosomal protein uL30 family. (87 aa)
	FOC4_g10003033	54S ribosomal protein RML2, mitochondrial. (372 aa)
	FOC4_g10012496	Uncharacterized protein. (238 aa)
	FOC4_g10012695	Uncharacterized protein. (172 aa)
	FOC4_g10006864	54S ribosomal protein L3, mitochondrial. (383 aa)
	FOC4_g10007270	54S ribosomal protein L9, mitochondrial. (332 aa)
	FOC4_g10015149	60S ribosomal protein L37, mitochondrial. (193 aa)
	FOC4_g10010499	54S ribosomal protein L12, mitochondrial. (222 aa)
	FOC4_g10011086	54S ribosomal protein L7, mitochondrial. (353 aa)
	FOC4_g10007977	Uncharacterized protein. (153 aa)
	FOC4_g10013901	60S ribosomal protein L8, mitochondrial; Belongs to the bacterial ribosomal protein bL17 family. (228 aa)
	FOC4_g10010801	54S ribosomal protein L38, mitochondrial; Belongs to the universal ribosomal protein uL14 family. (125 aa)
	FOC4_g10011886	60S ribosomal protein L19, mitochondrial; Belongs to the universal ribosomal protein uL11 family. (154 aa)
	FOC4_g10010465	60S ribosomal protein subunit img1, mitochondrial. (229 aa)
	FOC4_g10010393	54S ribosomal protein L17, mitochondrial. (312 aa)
	FOC4_g10010290	54S ribosomal protein L25, mitochondrial. (158 aa)
	FOC4_g10010589	54S ribosomal protein L51, mitochondrial. (137 aa)
	FOC4_g10010382	TPR_REGION domain-containing protein. (360 aa)
	FOC4_g10014744	54S ribosomal protein L16, mitochondrial; Belongs to the universal ribosomal protein uL16 family. (252 aa)
	FOC4_g10006108	Uncharacterized protein. (380 aa)
	FOC4_g10013449	54S ribosomal protein L20, mitochondrial. (206 aa)
	FOC4_g10015150	NADH-ubiquinone oxidoreductase 12 kDa subunit, mitochondrial. (127 aa)
	FOC4_g10014756	RF_PROK_I domain-containing protein. (207 aa)
	FOC4_g10014960	54S ribosomal protein L44, mitochondrial. (97 aa)
	FOC4_g10011866	Uncharacterized protein. (202 aa)
	FOC4_g10004480	54S ribosomal protein L24, mitochondrial. (255 aa)
	FOC4_g10008691	Uncharacterized protein. (255 aa)
	FOC4_g10008308	60S ribosomal protein L35, mitochondrial. (437 aa)
	FOC4_g10008302	RNase III domain-containing protein. (260 aa)
	FOC4_g10009381	54S ribosomal protein L10, mitochondrial. (295 aa)
	FOC4_g10012961	Putative 60S ribosomal protein MRP49, mitochondrial. (203 aa)
	FOC4_g10012648	Putative 60S ribosomal protein L32, mitochondrial. (119 aa)
	FOC4_g10010023	Uncharacterized protein. (456 aa)
	FOC4_g10008293	Protein GLC8. (258 aa)
	FOC4_g10006652	Uncharacterized protein. (159 aa)
	FOC4_g10008307	60S ribosomal protein yml6, mitochondrial. (322 aa)
	FOC4_g10008296	C2H2-type domain-containing protein. (649 aa)
	FOC4_g10008050	54S ribosomal protein L23, mitochondrial. (179 aa)
	FOC4_g10008295	Putative 60S ribosomal protein L2, mitochondrial. (268 aa)

Your Current Organism:

Fusarium oxysporum f. sp. cubense race 4

NCBI taxonomy Id: 1229665
Other names: F. oxysporum f. sp. cubense race 4

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FOC4_g10003033	FOC4_g10004480	N1RRG2	N1S8W8	54S ribosomal protein RML2, mitochondrial.	54S ribosomal protein L24, mitochondrial.	0.991
FOC4_g10003033	FOC4_g10006108	N1RRG2	N1RB46	54S ribosomal protein RML2, mitochondrial.	Uncharacterized protein.	0.675
FOC4_g10003033	FOC4_g10006652	N1RRG2	N1RVJ4	54S ribosomal protein RML2, mitochondrial.	Uncharacterized protein.	0.934
FOC4_g10003033	FOC4_g10006864	N1RRG2	N1RL41	54S ribosomal protein RML2, mitochondrial.	54S ribosomal protein L3, mitochondrial.	0.957
FOC4_g10003033	FOC4_g10007270	N1RRG2	N1RJM7	54S ribosomal protein RML2, mitochondrial.	54S ribosomal protein L9, mitochondrial.	0.997
FOC4_g10003033	FOC4_g10007977	N1RRG2	N1RGZ9	54S ribosomal protein RML2, mitochondrial.	Uncharacterized protein.	0.934
FOC4_g10003033	FOC4_g10008050	N1RRG2	N1RUK4	54S ribosomal protein RML2, mitochondrial.	54S ribosomal protein L23, mitochondrial.	0.997
FOC4_g10003033	FOC4_g10008293	N1RRG2	N1RWP7	54S ribosomal protein RML2, mitochondrial.	Protein GLC8.	0.981
FOC4_g10003033	FOC4_g10008295	N1RRG2	N1RT91	54S ribosomal protein RML2, mitochondrial.	Putative 60S ribosomal protein L2, mitochondrial.	0.984
FOC4_g10003033	FOC4_g10008296	N1RRG2	N1RVG0	54S ribosomal protein RML2, mitochondrial.	C2H2-type domain-containing protein.	0.981
FOC4_g10003033	FOC4_g10008302	N1RRG2	N1S5M2	54S ribosomal protein RML2, mitochondrial.	RNase III domain-containing protein.	0.675
FOC4_g10003033	FOC4_g10008307	N1RRG2	N1RVG7	54S ribosomal protein RML2, mitochondrial.	60S ribosomal protein yml6, mitochondrial.	0.995
FOC4_g10003033	FOC4_g10008308	N1RRG2	N1S5M7	54S ribosomal protein RML2, mitochondrial.	60S ribosomal protein L35, mitochondrial.	0.954
FOC4_g10003033	FOC4_g10008691	N1RRG2	N1S6Q5	54S ribosomal protein RML2, mitochondrial.	Uncharacterized protein.	0.675
FOC4_g10003033	FOC4_g10009381	N1RRG2	N1S307	54S ribosomal protein RML2, mitochondrial.	54S ribosomal protein L10, mitochondrial.	0.997
FOC4_g10003033	FOC4_g10010023	N1RRG2	N1RY07	54S ribosomal protein RML2, mitochondrial.	Uncharacterized protein.	0.940
FOC4_g10003033	FOC4_g10010290	N1RRG2	N1RDP3	54S ribosomal protein RML2, mitochondrial.	54S ribosomal protein L25, mitochondrial.	0.927
FOC4_g10003033	FOC4_g10010382	N1RRG2	N1RBR9	54S ribosomal protein RML2, mitochondrial.	TPR_REGION domain-containing protein.	0.940
FOC4_g10003033	FOC4_g10010393	N1RRG2	N1RDX5	54S ribosomal protein RML2, mitochondrial.	54S ribosomal protein L17, mitochondrial.	0.989
FOC4_g10003033	FOC4_g10010465	N1RRG2	N1RE53	54S ribosomal protein RML2, mitochondrial.	60S ribosomal protein subunit img1, mitochondrial.	0.996