(40 nodes) ATP-binding cassette (ABC) transporter complex network (Microbacterium gorillae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000826185_01510	Unannotated protein. (163 aa)
	GCA_000826185_00043	Unannotated protein. (311 aa)
	GCA_000826185_00110	Unannotated protein. (281 aa)
	GCA_000826185_00275	Unannotated protein. (257 aa)
	GCA_000826185_00359	Unannotated protein. (217 aa)
	GCA_000826185_00360	Unannotated protein. (313 aa)
	GCA_000826185_00427	Unannotated protein. (502 aa)
	GCA_000826185_00534	Unannotated protein. (327 aa)
	GCA_000826185_00554	Unannotated protein. (222 aa)
	GCA_000826185_00839	Unannotated protein. (559 aa)
	GCA_000826185_00924	Unannotated protein. (254 aa)
	GCA_000826185_01100	Unannotated protein. (260 aa)
	GCA_000826185_01295	Unannotated protein. (544 aa)
	GCA_000826185_01463	Unannotated protein. (406 aa)
	GCA_000826185_01484	Unannotated protein. (302 aa)
	GCA_000826185_01621	Unannotated protein. (274 aa)
	GCA_000826185_01639	Unannotated protein. (557 aa)
	GCA_000826185_01706	Unannotated protein. (268 aa)
	GCA_000826185_01733	Unannotated protein. (304 aa)
	GCA_000826185_01911	Unannotated protein. (276 aa)
	GCA_000826185_02041	Unannotated protein. (564 aa)
	GCA_000826185_02075	Unannotated protein. (368 aa)
	GCA_000826185_02105	Unannotated protein. (372 aa)
	GCA_000826185_02207	Unannotated protein. (519 aa)
	GCA_000826185_02235	Unannotated protein. (269 aa)
	GCA_000826185_02247	Unannotated protein. (620 aa)
	GCA_000826185_02267	Unannotated protein. (244 aa)
	GCA_000826185_02335	Unannotated protein. (546 aa)
	GCA_000826185_02415	Unannotated protein. (343 aa)
	GCA_000826185_02528	Unannotated protein. (290 aa)
	GCA_000826185_02666	Unannotated protein. (364 aa)
	GCA_000826185_02727	Unannotated protein. (373 aa)
	GCA_000826185_02756	Unannotated protein. (526 aa)
	GCA_000826185_02827	Unannotated protein. (342 aa)
	GCA_000826185_02953	Unannotated protein. (303 aa)
	GCA_000826185_02981	Unannotated protein. (295 aa)
	GCA_000826185_03108	Unannotated protein. (266 aa)
	GCA_000826185_03117	Unannotated protein. (270 aa)
	GCA_000826185_03247	Unannotated protein. (548 aa)
	GCA_000826185_03418	Unannotated protein. (546 aa)

Your Current Organism:

Microbacterium gorillae

NCBI taxonomy Id: 1231063
Other names: CSUR P207, DSM 26203, M. gorillae, Microbacterium sp. G3, strain G3

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000826185_00043	GCA_000826185_00427	Unannotated protein.	Unannotated protein.	0.962
GCA_000826185_00043	GCA_000826185_00534	Unannotated protein.	Unannotated protein.	0.948
GCA_000826185_00043	GCA_000826185_01484	Unannotated protein.	Unannotated protein.	0.959
GCA_000826185_00043	GCA_000826185_01639	Unannotated protein.	Unannotated protein.	0.958
GCA_000826185_00043	GCA_000826185_02075	Unannotated protein.	Unannotated protein.	0.896
GCA_000826185_00043	GCA_000826185_02105	Unannotated protein.	Unannotated protein.	0.973
GCA_000826185_00043	GCA_000826185_02207	Unannotated protein.	Unannotated protein.	0.882
GCA_000826185_00043	GCA_000826185_02335	Unannotated protein.	Unannotated protein.	0.917
GCA_000826185_00043	GCA_000826185_02727	Unannotated protein.	Unannotated protein.	0.896
GCA_000826185_00043	GCA_000826185_02756	Unannotated protein.	Unannotated protein.	0.882
GCA_000826185_00110	GCA_000826185_00275	Unannotated protein.	Unannotated protein.	0.882
GCA_000826185_00110	GCA_000826185_00359	Unannotated protein.	Unannotated protein.	0.887
GCA_000826185_00110	GCA_000826185_00360	Unannotated protein.	Unannotated protein.	0.905
GCA_000826185_00110	GCA_000826185_00554	Unannotated protein.	Unannotated protein.	0.905
GCA_000826185_00110	GCA_000826185_00924	Unannotated protein.	Unannotated protein.	0.896
GCA_000826185_00110	GCA_000826185_01621	Unannotated protein.	Unannotated protein.	0.859
GCA_000826185_00110	GCA_000826185_01706	Unannotated protein.	Unannotated protein.	0.628
GCA_000826185_00110	GCA_000826185_01733	Unannotated protein.	Unannotated protein.	0.629
GCA_000826185_00110	GCA_000826185_02075	Unannotated protein.	Unannotated protein.	0.831
GCA_000826185_00110	GCA_000826185_02235	Unannotated protein.	Unannotated protein.	0.812