(31 nodes) Oxidative phosphorylation network (Microbacterium gorillae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000826185_00749	Unannotated protein. (304 aa)
	GCA_000826185_03521	Unannotated protein. (177 aa)
	GCA_000826185_03126	Unannotated protein. (179 aa)
	GCA_000826185_03125	Unannotated protein. (520 aa)
	GCA_000826185_02979	Unannotated protein. (336 aa)
	GCA_000826185_02153	Unannotated protein. (287 aa)
	GCA_000826185_02103	Unannotated protein. (720 aa)
	GCA_000826185_00750	Unannotated protein. (578 aa)
	GCA_000826185_01123	Unannotated protein. (310 aa)
	GCA_000826185_01129	Unannotated protein. (276 aa)
	GCA_000826185_01211	Unannotated protein. (493 aa)
	GCA_000826185_01573	Unannotated protein. (270 aa)
	GCA_000826185_01668	Unannotated protein. (559 aa)
	GCA_000826185_01669	Unannotated protein. (358 aa)
	GCA_000826185_01785	Unannotated protein. (253 aa)
	GCA_000826185_01670	Unannotated protein. (268 aa)
	GCA_000826185_01671	Unannotated protein. (212 aa)
	GCA_000826185_01782	Unannotated protein. (141 aa)
	GCA_000826185_01783	Unannotated protein. (149 aa)
	GCA_000826185_01784	Unannotated protein. (600 aa)
	GCA_000826185_00583	Unannotated protein. (470 aa)
	GCA_000826185_00582	Unannotated protein. (336 aa)
	GCA_000826185_00503	Unannotated protein. (149 aa)
	GCA_000826185_00478	Unannotated protein. (86 aa)
	GCA_000826185_00477	Unannotated protein. (481 aa)
	GCA_000826185_00476	Unannotated protein. (298 aa)
	GCA_000826185_00475	Unannotated protein. (547 aa)
	GCA_000826185_00474	Unannotated protein. (263 aa)
	GCA_000826185_00473	Unannotated protein. (181 aa)
	GCA_000826185_00472	Unannotated protein. (79 aa)
	GCA_000826185_00471	Unannotated protein. (268 aa)

Your Current Organism:

Microbacterium gorillae

NCBI taxonomy Id: 1231063
Other names: CSUR P207, DSM 26203, M. gorillae, Microbacterium sp. G3, strain G3

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000826185_00471	GCA_000826185_00472	Unannotated protein.	Unannotated protein.	0.999
GCA_000826185_00471	GCA_000826185_00473	Unannotated protein.	Unannotated protein.	0.999
GCA_000826185_00471	GCA_000826185_00474	Unannotated protein.	Unannotated protein.	0.999
GCA_000826185_00471	GCA_000826185_00475	Unannotated protein.	Unannotated protein.	0.999
GCA_000826185_00471	GCA_000826185_00476	Unannotated protein.	Unannotated protein.	0.999
GCA_000826185_00471	GCA_000826185_00477	Unannotated protein.	Unannotated protein.	0.999
GCA_000826185_00471	GCA_000826185_00478	Unannotated protein.	Unannotated protein.	0.999
GCA_000826185_00471	GCA_000826185_00503	Unannotated protein.	Unannotated protein.	0.626
GCA_000826185_00471	GCA_000826185_00582	Unannotated protein.	Unannotated protein.	0.407
GCA_000826185_00471	GCA_000826185_00749	Unannotated protein.	Unannotated protein.	0.977
GCA_000826185_00471	GCA_000826185_00750	Unannotated protein.	Unannotated protein.	0.930
GCA_000826185_00471	GCA_000826185_01668	Unannotated protein.	Unannotated protein.	0.976
GCA_000826185_00471	GCA_000826185_01669	Unannotated protein.	Unannotated protein.	0.596
GCA_000826185_00471	GCA_000826185_01671	Unannotated protein.	Unannotated protein.	0.999
GCA_000826185_00471	GCA_000826185_03521	Unannotated protein.	Unannotated protein.	0.902
GCA_000826185_00472	GCA_000826185_00471	Unannotated protein.	Unannotated protein.	0.999
GCA_000826185_00472	GCA_000826185_00473	Unannotated protein.	Unannotated protein.	0.999
GCA_000826185_00472	GCA_000826185_00474	Unannotated protein.	Unannotated protein.	0.999
GCA_000826185_00472	GCA_000826185_00475	Unannotated protein.	Unannotated protein.	0.999
GCA_000826185_00472	GCA_000826185_00476	Unannotated protein.	Unannotated protein.	0.999