(58 nodes) Phosphorelay sensor kinase activity, and Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) network (Colwellia piezophila)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000378625_00010	Unannotated protein. (213 aa)
	GCA_000378625_00142	Unannotated protein. (332 aa)
	GCA_000378625_00235	Unannotated protein. (834 aa)
	GCA_000378625_00258	Unannotated protein. (657 aa)
	GCA_000378625_00394	Unannotated protein. (632 aa)
	GCA_000378625_00530	Unannotated protein. (398 aa)
	GCA_000378625_00591	Unannotated protein. (946 aa)
	GCA_000378625_00657	Unannotated protein. (694 aa)
	GCA_000378625_00757	Unannotated protein. (497 aa)
	GCA_000378625_00914	Unannotated protein. (1008 aa)
	GCA_000378625_01025	Unannotated protein. (1477 aa)
	GCA_000378625_01028	Unannotated protein. (439 aa)
	GCA_000378625_01168	Unannotated protein. (792 aa)
	GCA_000378625_01197	Unannotated protein. (405 aa)
	GCA_000378625_01244	Unannotated protein. (1698 aa)
	GCA_000378625_01251	Unannotated protein. (791 aa)
	GCA_000378625_01273	Unannotated protein. (466 aa)
	GCA_000378625_01274	Unannotated protein. (134 aa)
	GCA_000378625_01310	Unannotated protein. (436 aa)
	GCA_000378625_01456	Unannotated protein. (672 aa)
	GCA_000378625_01525	Unannotated protein. (851 aa)
	GCA_000378625_01592	Unannotated protein. (981 aa)
	GCA_000378625_01620	Unannotated protein. (1145 aa)
	GCA_000378625_01829	Unannotated protein. (632 aa)
	GCA_000378625_01954	Unannotated protein. (617 aa)
	GCA_000378625_01972	Unannotated protein. (404 aa)
	GCA_000378625_01974	Unannotated protein. (1116 aa)
	GCA_000378625_01975	Unannotated protein. (769 aa)
	GCA_000378625_01977	Unannotated protein. (361 aa)
	GCA_000378625_01987	Unannotated protein. (1381 aa)
	GCA_000378625_01989	Unannotated protein. (414 aa)
	GCA_000378625_01992	Unannotated protein. (424 aa)
	GCA_000378625_02034	Unannotated protein. (684 aa)
	GCA_000378625_02269	Unannotated protein. (724 aa)
	GCA_000378625_02270	Unannotated protein. (128 aa)
	GCA_000378625_02350	Unannotated protein. (811 aa)
	GCA_000378625_02387	Unannotated protein. (1476 aa)
	GCA_000378625_02390	Unannotated protein. (1168 aa)
	GCA_000378625_02391	Unannotated protein. (532 aa)
	GCA_000378625_02392	Unannotated protein. (1020 aa)
	GCA_000378625_02395	Unannotated protein. (559 aa)
	GCA_000378625_02398	Unannotated protein. (1391 aa)
	GCA_000378625_02608	Unannotated protein. (635 aa)
	GCA_000378625_02869	Unannotated protein. (943 aa)
	GCA_000378625_02934	Unannotated protein. (315 aa)
	GCA_000378625_03081	Unannotated protein. (1528 aa)
	GCA_000378625_03512	Unannotated protein. (1522 aa)
	GCA_000378625_03593	Unannotated protein. (475 aa)
	GCA_000378625_03703	Unannotated protein. (318 aa)
	GCA_000378625_03841	Unannotated protein. (327 aa)
	GCA_000378625_04053	Unannotated protein. (512 aa)
	GCA_000378625_04136	Unannotated protein. (296 aa)
	GCA_000378625_04213	Unannotated protein. (613 aa)
	GCA_000378625_04272	Unannotated protein. (417 aa)
	GCA_000378625_04374	Unannotated protein. (737 aa)
	GCA_000378625_04379	Unannotated protein. (402 aa)
	GCA_000378625_04426	Unannotated protein. (531 aa)
	GCA_000378625_04497	Unannotated protein. (1160 aa)

Your Current Organism:

Colwellia piezophila

NCBI taxonomy Id: 1265503
Other names: C. piezophila ATCC BAA-637, Colwellia piezophila ATCC BAA-637

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000378625_00010	GCA_000378625_00142	Unannotated protein.	Unannotated protein.	0.993
GCA_000378625_00010	GCA_000378625_00235	Unannotated protein.	Unannotated protein.	0.960
GCA_000378625_00010	GCA_000378625_00258	Unannotated protein.	Unannotated protein.	0.968
GCA_000378625_00010	GCA_000378625_00394	Unannotated protein.	Unannotated protein.	0.961
GCA_000378625_00010	GCA_000378625_00530	Unannotated protein.	Unannotated protein.	0.980
GCA_000378625_00010	GCA_000378625_00591	Unannotated protein.	Unannotated protein.	0.934
GCA_000378625_00010	GCA_000378625_00657	Unannotated protein.	Unannotated protein.	0.822
GCA_000378625_00010	GCA_000378625_00757	Unannotated protein.	Unannotated protein.	0.940
GCA_000378625_00010	GCA_000378625_00914	Unannotated protein.	Unannotated protein.	0.966
GCA_000378625_00010	GCA_000378625_01025	Unannotated protein.	Unannotated protein.	0.997
GCA_000378625_00010	GCA_000378625_01028	Unannotated protein.	Unannotated protein.	0.972
GCA_000378625_00010	GCA_000378625_01168	Unannotated protein.	Unannotated protein.	0.860
GCA_000378625_00010	GCA_000378625_01197	Unannotated protein.	Unannotated protein.	0.978
GCA_000378625_00010	GCA_000378625_01244	Unannotated protein.	Unannotated protein.	0.974
GCA_000378625_00010	GCA_000378625_01251	Unannotated protein.	Unannotated protein.	0.979
GCA_000378625_00010	GCA_000378625_01273	Unannotated protein.	Unannotated protein.	0.671
GCA_000378625_00010	GCA_000378625_01274	Unannotated protein.	Unannotated protein.	0.997
GCA_000378625_00010	GCA_000378625_01310	Unannotated protein.	Unannotated protein.	0.779
GCA_000378625_00010	GCA_000378625_01456	Unannotated protein.	Unannotated protein.	0.924
GCA_000378625_00010	GCA_000378625_01525	Unannotated protein.	Unannotated protein.	0.762