(100 nodes) Mixed, incl. TonB box, and Porin activity network (Colwellia piezophila)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000378625_00004	Unannotated protein. (466 aa)
	GCA_000378625_00005	Unannotated protein. (200 aa)
	GCA_000378625_00152	Unannotated protein. (259 aa)
	GCA_000378625_00153	Unannotated protein. (449 aa)
	GCA_000378625_00154	Unannotated protein. (174 aa)
	GCA_000378625_00155	Unannotated protein. (133 aa)
	GCA_000378625_00156	Unannotated protein. (204 aa)
	GCA_000378625_00157	Unannotated protein. (431 aa)
	GCA_000378625_00158	Unannotated protein. (139 aa)
	GCA_000378625_00357	Unannotated protein. (298 aa)
	GCA_000378625_00421	Unannotated protein. (1055 aa)
	GCA_000378625_00477	Unannotated protein. (954 aa)
	GCA_000378625_00527	Unannotated protein. (516 aa)
	GCA_000378625_00528	Unannotated protein. (918 aa)
	GCA_000378625_00529	Unannotated protein. (1012 aa)
	GCA_000378625_00533	Unannotated protein. (492 aa)
	GCA_000378625_00534	Unannotated protein. (334 aa)
	GCA_000378625_00535	Unannotated protein. (249 aa)
	GCA_000378625_00536	Unannotated protein. (518 aa)
	GCA_000378625_00537	Unannotated protein. (1008 aa)
	GCA_000378625_00608	Unannotated protein. (294 aa)
	GCA_000378625_00734	Unannotated protein. (239 aa)
	GCA_000378625_00735	Unannotated protein. (241 aa)
	GCA_000378625_00736	Unannotated protein. (507 aa)
	GCA_000378625_00737	Unannotated protein. (921 aa)
	GCA_000378625_00739	Unannotated protein. (342 aa)
	GCA_000378625_00776	Unannotated protein. (991 aa)
	GCA_000378625_00777	Unannotated protein. (508 aa)
	GCA_000378625_00791	Unannotated protein. (864 aa)
	GCA_000378625_00793	Unannotated protein. (501 aa)
	GCA_000378625_00794	Unannotated protein. (340 aa)
	GCA_000378625_00819	Unannotated protein. (47 aa)
	GCA_000378625_00820	Unannotated protein. (888 aa)
	GCA_000378625_00930	Unannotated protein. (389 aa)
	GCA_000378625_00931	Unannotated protein. (284 aa)
	GCA_000378625_01071	Unannotated protein. (399 aa)
	GCA_000378625_01172	Unannotated protein. (389 aa)
	GCA_000378625_01261	Unannotated protein. (790 aa)
	GCA_000378625_01306	Unannotated protein. (351 aa)
	GCA_000378625_01316	Unannotated protein. (905 aa)
	GCA_000378625_01586	Unannotated protein. (774 aa)
	GCA_000378625_01596	Unannotated protein. (835 aa)
	GCA_000378625_01785	Unannotated protein. (389 aa)
	GCA_000378625_01832	Unannotated protein. (334 aa)
	GCA_000378625_01935	Unannotated protein. (768 aa)
	GCA_000378625_02320	Unannotated protein. (1017 aa)
	GCA_000378625_02340	Unannotated protein. (1105 aa)
	GCA_000378625_02341	Unannotated protein. (1009 aa)
	GCA_000378625_02342	Unannotated protein. (1037 aa)
	GCA_000378625_02344	Unannotated protein. (187 aa)
	GCA_000378625_02466	Unannotated protein. (99 aa)
	GCA_000378625_02545	Unannotated protein. (966 aa)
	GCA_000378625_02611	Unannotated protein. (719 aa)
	GCA_000378625_02612	Unannotated protein. (654 aa)
	GCA_000378625_02613	Unannotated protein. (53 aa)
	GCA_000378625_02659	Unannotated protein. (126 aa)
	GCA_000378625_02768	Unannotated protein. (61 aa)
	GCA_000378625_02769	Unannotated protein. (134 aa)
	GCA_000378625_02814	Unannotated protein. (749 aa)
	GCA_000378625_02815	Unannotated protein. (1020 aa)
	GCA_000378625_02976	Unannotated protein. (275 aa)
	GCA_000378625_03022	Unannotated protein. (914 aa)
	GCA_000378625_03057	Unannotated protein. (365 aa)
	GCA_000378625_03171	Unannotated protein. (224 aa)
	GCA_000378625_03186	Unannotated protein. (837 aa)
	GCA_000378625_03253	Unannotated protein. (515 aa)
	GCA_000378625_03254	Unannotated protein. (967 aa)
	GCA_000378625_03278	Unannotated protein. (1013 aa)
	GCA_000378625_03283	Unannotated protein. (208 aa)
	GCA_000378625_03284	Unannotated protein. (391 aa)
	GCA_000378625_03285	Unannotated protein. (1081 aa)
	GCA_000378625_03295	Unannotated protein. (1040 aa)
	GCA_000378625_03300	Unannotated protein. (135 aa)
	GCA_000378625_03323	Unannotated protein. (640 aa)
	GCA_000378625_03324	Unannotated protein. (155 aa)
	GCA_000378625_03601	Unannotated protein. (282 aa)
	GCA_000378625_03604	Unannotated protein. (409 aa)
	GCA_000378625_03682	Unannotated protein. (259 aa)
	GCA_000378625_03733	Unannotated protein. (316 aa)
	GCA_000378625_03774	Unannotated protein. (629 aa)
	GCA_000378625_03817	Unannotated protein. (315 aa)
	GCA_000378625_03849	Unannotated protein. (126 aa)
	GCA_000378625_03925	Unannotated protein. (219 aa)
	GCA_000378625_03940	Unannotated protein. (286 aa)
	GCA_000378625_03976	Unannotated protein. (896 aa)
	GCA_000378625_04050	Unannotated protein. (359 aa)
	GCA_000378625_04110	Unannotated protein. (357 aa)
	GCA_000378625_04148	Unannotated protein. (265 aa)
	GCA_000378625_04149	Unannotated protein. (186 aa)
	GCA_000378625_04150	Unannotated protein. (449 aa)
	GCA_000378625_04151	Unannotated protein. (312 aa)
	GCA_000378625_04152	Unannotated protein. (141 aa)
	GCA_000378625_04153	Unannotated protein. (230 aa)
	GCA_000378625_04154	Unannotated protein. (144 aa)
	GCA_000378625_04321	Unannotated protein. (697 aa)
	GCA_000378625_04375	Unannotated protein. (669 aa)
	GCA_000378625_04378	Unannotated protein. (787 aa)
	GCA_000378625_04495	Unannotated protein. (709 aa)
	GCA_000378625_04548	Unannotated protein. (210 aa)
	GCA_000378625_04557	Unannotated protein. (252 aa)

Your Current Organism:

Colwellia piezophila

NCBI taxonomy Id: 1265503
Other names: C. piezophila ATCC BAA-637, Colwellia piezophila ATCC BAA-637

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000378625_00004	GCA_000378625_00005	Unannotated protein.	Unannotated protein.	0.975
GCA_000378625_00004	GCA_000378625_00357	Unannotated protein.	Unannotated protein.	0.805
GCA_000378625_00004	GCA_000378625_00608	Unannotated protein.	Unannotated protein.	0.805
GCA_000378625_00004	GCA_000378625_01071	Unannotated protein.	Unannotated protein.	0.761
GCA_000378625_00004	GCA_000378625_01306	Unannotated protein.	Unannotated protein.	0.574
GCA_000378625_00004	GCA_000378625_01785	Unannotated protein.	Unannotated protein.	0.658
GCA_000378625_00004	GCA_000378625_01832	Unannotated protein.	Unannotated protein.	0.574
GCA_000378625_00004	GCA_000378625_02545	Unannotated protein.	Unannotated protein.	0.766
GCA_000378625_00004	GCA_000378625_02611	Unannotated protein.	Unannotated protein.	0.757
GCA_000378625_00004	GCA_000378625_02612	Unannotated protein.	Unannotated protein.	0.458
GCA_000378625_00004	GCA_000378625_02815	Unannotated protein.	Unannotated protein.	0.757
GCA_000378625_00004	GCA_000378625_02976	Unannotated protein.	Unannotated protein.	0.503
GCA_000378625_00004	GCA_000378625_03057	Unannotated protein.	Unannotated protein.	0.574
GCA_000378625_00004	GCA_000378625_03323	Unannotated protein.	Unannotated protein.	0.757
GCA_000378625_00004	GCA_000378625_03601	Unannotated protein.	Unannotated protein.	0.761
GCA_000378625_00004	GCA_000378625_03733	Unannotated protein.	Unannotated protein.	0.574
GCA_000378625_00004	GCA_000378625_03774	Unannotated protein.	Unannotated protein.	0.757
GCA_000378625_00004	GCA_000378625_03976	Unannotated protein.	Unannotated protein.	0.757
GCA_000378625_00004	GCA_000378625_04050	Unannotated protein.	Unannotated protein.	0.574
GCA_000378625_00004	GCA_000378625_04149	Unannotated protein.	Unannotated protein.	0.805