(51 nodes) Methane metabolism network (Streptomyces sp. TAA204)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000424965_03191	Unannotated protein. (428 aa)
	GCA_000424965_03262	Unannotated protein. (220 aa)
	GCA_000424965_03424	Unannotated protein. (293 aa)
	GCA_000424965_03677	Unannotated protein. (136 aa)
	GCA_000424965_03924	Unannotated protein. (347 aa)
	GCA_000424965_03925	Unannotated protein. (269 aa)
	GCA_000424965_03987	Unannotated protein. (361 aa)
	GCA_000424965_03990	Unannotated protein. (808 aa)
	GCA_000424965_04149	Unannotated protein. (68 aa)
	GCA_000424965_04204	Unannotated protein. (340 aa)
	GCA_000424965_04222	Unannotated protein. (810 aa)
	GCA_000424965_04297	Unannotated protein. (219 aa)
	GCA_000424965_04362	Unannotated protein. (670 aa)
	GCA_000424965_04445	Unannotated protein. (346 aa)
	GCA_000424965_04563	Unannotated protein. (362 aa)
	GCA_000424965_04498	Unannotated protein. (252 aa)
	GCA_000424965_00016	Unannotated protein. (327 aa)
	GCA_000424965_00017	Unannotated protein. (478 aa)
	GCA_000424965_00094	Unannotated protein. (426 aa)
	GCA_000424965_00130	Unannotated protein. (947 aa)
	GCA_000424965_00323	Unannotated protein. (853 aa)
	GCA_000424965_00340	Unannotated protein. (380 aa)
	GCA_000424965_00376	Unannotated protein. (372 aa)
	GCA_000424965_00423	Unannotated protein. (327 aa)
	GCA_000424965_00492	Unannotated protein. (252 aa)
	GCA_000424965_00709	Unannotated protein. (130 aa)
	GCA_000424965_00836	Unannotated protein. (280 aa)
	GCA_000424965_01073	Unannotated protein. (567 aa)
	GCA_000424965_01350	Unannotated protein. (209 aa)
	GCA_000424965_01473	Unannotated protein. (409 aa)
	GCA_000424965_01544	Unannotated protein. (314 aa)
	GCA_000424965_01612	Unannotated protein. (668 aa)
	GCA_000424965_01617	Unannotated protein. (280 aa)
	GCA_000424965_01758	Unannotated protein. (66 aa)
	GCA_000424965_01898	Unannotated protein. (344 aa)
	GCA_000424965_02068	Unannotated protein. (329 aa)
	GCA_000424965_02084	Unannotated protein. (438 aa)
	GCA_000424965_02248	Unannotated protein. (342 aa)
	GCA_000424965_02380	Unannotated protein. (756 aa)
	GCA_000424965_02386	Unannotated protein. (319 aa)
	GCA_000424965_02430	Unannotated protein. (344 aa)
	GCA_000424965_02535	Unannotated protein. (489 aa)
	GCA_000424965_02565	Unannotated protein. (252 aa)
	GCA_000424965_02754	Unannotated protein. (390 aa)
	GCA_000424965_02840	Unannotated protein. (448 aa)
	GCA_000424965_03065	Unannotated protein. (223 aa)
	GCA_000424965_03066	Unannotated protein. (67 aa)
	GCA_000424965_03108	Unannotated protein. (529 aa)
	GCA_000424965_03165	Unannotated protein. (424 aa)
	GCA_000424965_03189	Unannotated protein. (341 aa)
	GCA_000424965_03190	Unannotated protein. (713 aa)

Your Current Organism:

Streptomyces sp. TAA204

NCBI taxonomy Id: 1289387
Other names: S. sp. TAA204

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000424965_00016	GCA_000424965_00017	Unannotated protein.	Unannotated protein.	0.999
GCA_000424965_00016	GCA_000424965_00323	Unannotated protein.	Unannotated protein.	0.982
GCA_000424965_00016	GCA_000424965_03065	Unannotated protein.	Unannotated protein.	0.992
GCA_000424965_00016	GCA_000424965_03066	Unannotated protein.	Unannotated protein.	0.433
GCA_000424965_00017	GCA_000424965_00016	Unannotated protein.	Unannotated protein.	0.999
GCA_000424965_00017	GCA_000424965_00323	Unannotated protein.	Unannotated protein.	0.788
GCA_000424965_00017	GCA_000424965_02430	Unannotated protein.	Unannotated protein.	0.853
GCA_000424965_00017	GCA_000424965_03065	Unannotated protein.	Unannotated protein.	0.917
GCA_000424965_00017	GCA_000424965_03066	Unannotated protein.	Unannotated protein.	0.453
GCA_000424965_00094	GCA_000424965_00130	Unannotated protein.	Unannotated protein.	0.931
GCA_000424965_00094	GCA_000424965_00423	Unannotated protein.	Unannotated protein.	0.414
GCA_000424965_00094	GCA_000424965_00492	Unannotated protein.	Unannotated protein.	0.995
GCA_000424965_00094	GCA_000424965_00836	Unannotated protein.	Unannotated protein.	0.982
GCA_000424965_00094	GCA_000424965_01473	Unannotated protein.	Unannotated protein.	0.537
GCA_000424965_00094	GCA_000424965_02068	Unannotated protein.	Unannotated protein.	0.741
GCA_000424965_00094	GCA_000424965_02248	Unannotated protein.	Unannotated protein.	0.895
GCA_000424965_00094	GCA_000424965_02565	Unannotated protein.	Unannotated protein.	0.628
GCA_000424965_00094	GCA_000424965_03189	Unannotated protein.	Unannotated protein.	0.896
GCA_000424965_00094	GCA_000424965_03190	Unannotated protein.	Unannotated protein.	0.656
GCA_000424965_00094	GCA_000424965_03191	Unannotated protein.	Unannotated protein.	0.419