(29 nodes) Basal transcription factors network (Wallemia ichthyophaga)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	J056_003243	RNA polymerase II transcription factor B subunit 5. (66 aa)
	J056_002845	Transcription initiation factor TFIID subunit 6. (466 aa)
	J056_002648	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (126 aa)
	J056_002557	Transcription initiation factor TFIID subunit 4. (319 aa)
	J056_001846	Cyclin CCL1; Belongs to the cyclin family. (390 aa)
	J056_001574	Transcription initiation factor TFIID subunit 7. (538 aa)
	J056_001459	Transcription initiation factor TFIID subunit 2. (1859 aa)
	J056_001095	Transcription initiation factor IIA large subunit. (153 aa)
	J056_004780	Transcription initiation factor IIE subunit alpha. (385 aa)
	J056_004697	General transcription factor IIH subunit 3. (259 aa)
	J056_004598	Suppressor of stem-loop protein 1. (330 aa)
	J056_004596	Transcription initiation factor IIF subunit beta. (314 aa)
	J056_004310	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (511 aa)
	J056_001891	RNA polymerase II transcription factor B subunit 1. (543 aa)
	J056_004299	Transcription initiation factor TFIID subunit 10. (127 aa)
	J056_004304	Transcription initiation factor IIB. (336 aa)
	J056_003680	Serine/threonine-protein kinase crk1; Belongs to the protein kinase superfamily. (351 aa)
	J056_000874	TATA-box-binding protein. (239 aa)
	J056_003261	DNA repair helicase rad15. (1177 aa)
	J056_003086	Transcription initiation factor TFIID subunit 13. (111 aa)
	J056_002953	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (385 aa)
	J056_002087	Transcription initiation factor IIE subunit beta. (534 aa)
	J056_002086	Transcription initiation factor IIE subunit beta. (528 aa)
	J056_003647	Transcription initiation factor TFIID subunit 12. (399 aa)
	J056_002210	Transcription initiation factor TFIID subunit 11. (214 aa)
	J056_002237	RNA polymerase II transcription factor B subunit 3. (404 aa)
	J056_002260	Transcription initiation factor TFIID subunit 5. (1337 aa)
	J056_000354	Putative transcription initiation factor TFIID kDa subunit. (1140 aa)
	J056_000041	Putative DNA repair helicase ercc3. (781 aa)

Your Current Organism:

Wallemia ichthyophaga

NCBI taxonomy Id: 1299270
Other names: W. ichthyophaga EXF-994, Wallemia ichthyophaga EXF-994

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
J056_000041	J056_000354	R9AR62	R9AQX2	Putative DNA repair helicase ercc3.	Putative transcription initiation factor TFIID kDa subunit.	0.765
J056_000041	J056_000874	R9AR62	R9AJX4	Putative DNA repair helicase ercc3.	TATA-box-binding protein.	0.970
J056_000041	J056_001095	R9AR62	R9ADE9	Putative DNA repair helicase ercc3.	Transcription initiation factor IIA large subunit.	0.962
J056_000041	J056_001459	R9AR62	R9ACQ0	Putative DNA repair helicase ercc3.	Transcription initiation factor TFIID subunit 2.	0.816
J056_000041	J056_001574	R9AR62	R9AC70	Putative DNA repair helicase ercc3.	Transcription initiation factor TFIID subunit 7.	0.767
J056_000041	J056_001846	R9AR62	R9ABC6	Putative DNA repair helicase ercc3.	Cyclin CCL1; Belongs to the cyclin family.	0.989
J056_000041	J056_001891	R9AR62	R9AH26	Putative DNA repair helicase ercc3.	RNA polymerase II transcription factor B subunit 1.	0.999
J056_000041	J056_002086	R9AR62	R9AP99	Putative DNA repair helicase ercc3.	Transcription initiation factor IIE subunit beta.	0.956
J056_000041	J056_002087	R9AR62	R9AP51	Putative DNA repair helicase ercc3.	Transcription initiation factor IIE subunit beta.	0.956
J056_000041	J056_002210	R9AR62	R9API2	Putative DNA repair helicase ercc3.	Transcription initiation factor TFIID subunit 11.	0.807
J056_000041	J056_002237	R9AR62	R9APL2	Putative DNA repair helicase ercc3.	RNA polymerase II transcription factor B subunit 3.	0.998
J056_000041	J056_002260	R9AR62	R9APP1	Putative DNA repair helicase ercc3.	Transcription initiation factor TFIID subunit 5.	0.765
J056_000041	J056_002557	R9AR62	R9AA96	Putative DNA repair helicase ercc3.	Transcription initiation factor TFIID subunit 4.	0.761
J056_000041	J056_002648	R9AR62	R9A9X7	Putative DNA repair helicase ercc3.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.959
J056_000041	J056_002845	R9AR62	R9A9C4	Putative DNA repair helicase ercc3.	Transcription initiation factor TFIID subunit 6.	0.807
J056_000041	J056_002953	R9AR62	R9ANK6	Putative DNA repair helicase ercc3.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.999
J056_000041	J056_003086	R9AR62	R9AN34	Putative DNA repair helicase ercc3.	Transcription initiation factor TFIID subunit 13.	0.807
J056_000041	J056_003243	R9AR62	R9A973	Putative DNA repair helicase ercc3.	RNA polymerase II transcription factor B subunit 5.	0.994
J056_000041	J056_003261	R9AR62	R9AKH2	Putative DNA repair helicase ercc3.	DNA repair helicase rad15.	0.999
J056_000041	J056_003647	R9AR62	R9APE4	Putative DNA repair helicase ercc3.	Transcription initiation factor TFIID subunit 12.	0.809