(6 nodes) Demethylation network (Daedalea quercina)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A165R1J5	Clavaminate synthase-like protein. (448 aa)
	A0A165TVJ0	Fe2OG dioxygenase domain-containing protein. (449 aa)
	A0A165TJB1	Protein phosphatase methylesterase. (392 aa)
	A0A165SZJ2	JmjC domain-containing protein. (986 aa)
	A0A165PGF6	Fe2OG dioxygenase domain-containing protein. (573 aa)
	A0A165NE00	Clavaminate synthase-like protein. (709 aa)

Your Current Organism:

Daedalea quercina

NCBI taxonomy Id: 1314783
Other names: D. quercina L-15889, Daedalea quercina L-15889

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A165NE00	A0A165PGF6	Clavaminate synthase-like protein.	Fe2OG dioxygenase domain-containing protein.	0.967
A0A165NE00	A0A165R1J5	Clavaminate synthase-like protein.	Clavaminate synthase-like protein.	0.489
A0A165NE00	A0A165SZJ2	Clavaminate synthase-like protein.	JmjC domain-containing protein.	0.769
A0A165PGF6	A0A165NE00	Fe2OG dioxygenase domain-containing protein.	Clavaminate synthase-like protein.	0.967
A0A165PGF6	A0A165SZJ2	Fe2OG dioxygenase domain-containing protein.	JmjC domain-containing protein.	0.648
A0A165R1J5	A0A165NE00	Clavaminate synthase-like protein.	Clavaminate synthase-like protein.	0.489
A0A165SZJ2	A0A165NE00	JmjC domain-containing protein.	Clavaminate synthase-like protein.	0.769
A0A165SZJ2	A0A165PGF6	JmjC domain-containing protein.	Fe2OG dioxygenase domain-containing protein.	0.648