(16 nodes) Protein sumoylation, and Protein desumoylation network (Rhodnius prolixus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	R4FLD6_RHOPR	Small ubiquitin-related modifier. (94 aa)
	R4FPL4_RHOPR	Putative ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family. (159 aa)
	T1HAG4_RHOPR	BHLH domain-containing protein. (118 aa)
	T1HDD8_RHOPR	Uncharacterized protein. (566 aa)
	T1HIT3_RHOPR	ULP_PROTEASE domain-containing protein. (309 aa)
	T1HLH5_RHOPR	Uncharacterized protein. (651 aa)
	T1HM19_RHOPR	ThiF domain-containing protein. (343 aa)
	T1HN10_RHOPR	Rad60-SLD domain-containing protein. (236 aa)
	T1HPW0_RHOPR	Uncharacterized protein. (567 aa)
	T1HYI9_RHOPR	SP-RING-type domain-containing protein. (294 aa)
	T1HYK7_RHOPR	Uncharacterized protein. (98 aa)
	T1HYP8_RHOPR	Uncharacterized protein. (299 aa)
	T1I6K6_RHOPR	Uncharacterized protein. (152 aa)
	T1IBJ1_RHOPR	Uncharacterized protein. (111 aa)
	T1IDJ7_RHOPR	Small ubiquitin-related modifier. (102 aa)
	T1IGD4_RHOPR	Rad60-SLD domain-containing protein. (215 aa)

Your Current Organism:

Rhodnius prolixus

NCBI taxonomy Id: 13249
Other names: R. prolixus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
R4FLD6_RHOPR	R4FPL4_RHOPR	R4FLD6	R4FPL4	Small ubiquitin-related modifier.	Putative ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	0.995
R4FLD6_RHOPR	T1HAG4_RHOPR	R4FLD6	T1HAG4	Small ubiquitin-related modifier.	BHLH domain-containing protein.	0.638
R4FLD6_RHOPR	T1HDD8_RHOPR	R4FLD6	T1HDD8	Small ubiquitin-related modifier.	Uncharacterized protein.	0.965
R4FLD6_RHOPR	T1HIT3_RHOPR	R4FLD6	T1HIT3	Small ubiquitin-related modifier.	ULP_PROTEASE domain-containing protein.	0.969
R4FLD6_RHOPR	T1HLH5_RHOPR	R4FLD6	T1HLH5	Small ubiquitin-related modifier.	Uncharacterized protein.	0.681
R4FLD6_RHOPR	T1HM19_RHOPR	R4FLD6	T1HM19	Small ubiquitin-related modifier.	ThiF domain-containing protein.	0.980
R4FLD6_RHOPR	T1HPW0_RHOPR	R4FLD6	T1HPW0	Small ubiquitin-related modifier.	Uncharacterized protein.	0.978
R4FLD6_RHOPR	T1HYI9_RHOPR	R4FLD6	T1HYI9	Small ubiquitin-related modifier.	SP-RING-type domain-containing protein.	0.965
R4FLD6_RHOPR	T1HYK7_RHOPR	R4FLD6	T1HYK7	Small ubiquitin-related modifier.	Uncharacterized protein.	0.907
R4FLD6_RHOPR	T1HYP8_RHOPR	R4FLD6	T1HYP8	Small ubiquitin-related modifier.	Uncharacterized protein.	0.884
R4FLD6_RHOPR	T1I6K6_RHOPR	R4FLD6	T1I6K6	Small ubiquitin-related modifier.	Uncharacterized protein.	0.907
R4FLD6_RHOPR	T1IBJ1_RHOPR	R4FLD6	T1IBJ1	Small ubiquitin-related modifier.	Uncharacterized protein.	0.907
R4FLD6_RHOPR	T1IDJ7_RHOPR	R4FLD6	T1IDJ7	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.944
R4FPL4_RHOPR	R4FLD6_RHOPR	R4FPL4	R4FLD6	Putative ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	Small ubiquitin-related modifier.	0.995
R4FPL4_RHOPR	T1HAG4_RHOPR	R4FPL4	T1HAG4	Putative ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	BHLH domain-containing protein.	0.688
R4FPL4_RHOPR	T1HDD8_RHOPR	R4FPL4	T1HDD8	Putative ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	Uncharacterized protein.	0.980
R4FPL4_RHOPR	T1HIT3_RHOPR	R4FPL4	T1HIT3	Putative ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	ULP_PROTEASE domain-containing protein.	0.555
R4FPL4_RHOPR	T1HLH5_RHOPR	R4FPL4	T1HLH5	Putative ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	Uncharacterized protein.	0.748
R4FPL4_RHOPR	T1HM19_RHOPR	R4FPL4	T1HM19	Putative ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	ThiF domain-containing protein.	0.991
R4FPL4_RHOPR	T1HN10_RHOPR	R4FPL4	T1HN10	Putative ubiquitin-conjugating enzyme; Belongs to the ubiquitin-conjugating enzyme family.	Rad60-SLD domain-containing protein.	0.968