6 items (Zootermopsis nevadensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	L798_11621	3-phosphoinositide-dependent protein kinase 1. (598 aa)
	L798_05121	Cold shock domain-containing protein E1. (938 aa)
	L798_03982	Protein kinase C iota type. (136 aa)
	L798_02525	Ras-like protein 1. (191 aa)
	L798_01386	Ras-like protein. (156 aa)
	L798_13997	Protein kinase C iota type; Belongs to the protein kinase superfamily. (494 aa)

Your Current Organism:

Zootermopsis nevadensis

NCBI taxonomy Id: 136037
Other names: Z. nevadensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
L798_01386	L798_02525	A0A067QWI7	A0A067QHD4	Ras-like protein.	Ras-like protein 1.	0.900
L798_01386	L798_03982	A0A067QWI7	A0A067RNN0	Ras-like protein.	Protein kinase C iota type.	0.406
L798_01386	L798_11621	A0A067QWI7	A0A067R594	Ras-like protein.	3-phosphoinositide-dependent protein kinase 1.	0.444
L798_01386	L798_13997	A0A067QWI7	A0A067R2P7	Ras-like protein.	Protein kinase C iota type; Belongs to the protein kinase superfamily.	0.406
L798_02525	L798_01386	A0A067QHD4	A0A067QWI7	Ras-like protein 1.	Ras-like protein.	0.900
L798_02525	L798_03982	A0A067QHD4	A0A067RNN0	Ras-like protein 1.	Protein kinase C iota type.	0.406
L798_02525	L798_11621	A0A067QHD4	A0A067R594	Ras-like protein 1.	3-phosphoinositide-dependent protein kinase 1.	0.444
L798_02525	L798_13997	A0A067QHD4	A0A067R2P7	Ras-like protein 1.	Protein kinase C iota type; Belongs to the protein kinase superfamily.	0.406
L798_03982	L798_01386	A0A067RNN0	A0A067QWI7	Protein kinase C iota type.	Ras-like protein.	0.406
L798_03982	L798_02525	A0A067RNN0	A0A067QHD4	Protein kinase C iota type.	Ras-like protein 1.	0.406
L798_03982	L798_05121	A0A067RNN0	A0A067RAW6	Protein kinase C iota type.	Cold shock domain-containing protein E1.	0.406
L798_03982	L798_11621	A0A067RNN0	A0A067R594	Protein kinase C iota type.	3-phosphoinositide-dependent protein kinase 1.	0.653
L798_05121	L798_03982	A0A067RAW6	A0A067RNN0	Cold shock domain-containing protein E1.	Protein kinase C iota type.	0.406
L798_05121	L798_11621	A0A067RAW6	A0A067R594	Cold shock domain-containing protein E1.	3-phosphoinositide-dependent protein kinase 1.	0.444
L798_05121	L798_13997	A0A067RAW6	A0A067R2P7	Cold shock domain-containing protein E1.	Protein kinase C iota type; Belongs to the protein kinase superfamily.	0.406
L798_11621	L798_01386	A0A067R594	A0A067QWI7	3-phosphoinositide-dependent protein kinase 1.	Ras-like protein.	0.444
L798_11621	L798_02525	A0A067R594	A0A067QHD4	3-phosphoinositide-dependent protein kinase 1.	Ras-like protein 1.	0.444
L798_11621	L798_03982	A0A067R594	A0A067RNN0	3-phosphoinositide-dependent protein kinase 1.	Protein kinase C iota type.	0.653
L798_11621	L798_05121	A0A067R594	A0A067RAW6	3-phosphoinositide-dependent protein kinase 1.	Cold shock domain-containing protein E1.	0.444
L798_11621	L798_13997	A0A067R594	A0A067R2P7	3-phosphoinositide-dependent protein kinase 1.	Protein kinase C iota type; Belongs to the protein kinase superfamily.	0.681