5 items (Nocardia nova) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AHH17803.1	Putative [NiFe] hydrogenase small subunit. (351 aa)
	gltB	Glutamate synthase large subunit. (1542 aa)
	sdhB	Succinate dehydrogenase subunit B. (258 aa)
	fdxA	Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (107 aa)
	AHH22319.1	Putative succinate dehydrogenase/fumarate reductase iron-sulfur protein. (248 aa)

Your Current Organism:

Nocardia nova

NCBI taxonomy Id: 1415166
Other names: N. nova SH22a, Nocardia nova SH22a

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AHH17803.1	AHH22319.1	NONO_c30160	NONO_c75640	Putative [NiFe] hydrogenase small subunit.	Putative succinate dehydrogenase/fumarate reductase iron-sulfur protein.	0.455
AHH17803.1	sdhB	NONO_c30160	NONO_c11110	Putative [NiFe] hydrogenase small subunit.	Succinate dehydrogenase subunit B.	0.455
AHH22319.1	AHH17803.1	NONO_c75640	NONO_c30160	Putative succinate dehydrogenase/fumarate reductase iron-sulfur protein.	Putative [NiFe] hydrogenase small subunit.	0.455
AHH22319.1	sdhB	NONO_c75640	NONO_c11110	Putative succinate dehydrogenase/fumarate reductase iron-sulfur protein.	Succinate dehydrogenase subunit B.	0.911
sdhB	AHH17803.1	NONO_c11110	NONO_c30160	Succinate dehydrogenase subunit B.	Putative [NiFe] hydrogenase small subunit.	0.455
sdhB	AHH22319.1	NONO_c11110	NONO_c75640	Succinate dehydrogenase subunit B.	Putative succinate dehydrogenase/fumarate reductase iron-sulfur protein.	0.911