STRINGSTRING
spxA spxA mucA mucA AHI32148.1 AHI32148.1 rutR rutR AHI31806.1 AHI31806.1 nsrR nsrR AHI31674.1 AHI31674.1 AHI31663.1 AHI31663.1 AHI31196.1 AHI31196.1 nrdR nrdR AHI32609.1 AHI32609.1 lexA lexA AHI30983.1 AHI30983.1 betI betI AHI30967.1 AHI30967.1 AHI30932.1 AHI30932.1 AHI30711.1 AHI30711.1 AHI30700.1 AHI30700.1 kstR2 kstR2 AHI32869.1 AHI32869.1 kstR2-2 kstR2-2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
spxAArsC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ArsC family. (114 aa)
mucAAnti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology. (189 aa)
AHI32148.1Anchor protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)
rutRTetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)
AHI31806.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)
nsrRRrf2 family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (145 aa)
AHI31674.1TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (231 aa)
AHI31663.1TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)
AHI31196.1Anti-sigma-28 factor FlgM; Derived by automated computational analysis using gene prediction method: Protein Homology. (108 aa)
nrdRNrdR family transcriptional regulator; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family. (172 aa)
AHI32609.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (235 aa)
lexALexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. (202 aa)
AHI30983.1Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)
betIBetI family transcriptional regulator; Repressor involved in choline regulation of the bet genes. (197 aa)
AHI30967.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (241 aa)
AHI30932.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (87 aa)
AHI30711.1TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (230 aa)
AHI30700.1TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)
kstR2TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (205 aa)
AHI32869.1Protein impA; Derived by automated computational analysis using gene prediction method: Protein Homology. (142 aa)
kstR2-2TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (204 aa)
Your Current Organism:
Marinobacter salarius
NCBI taxonomy Id: 1420917
Other names: CIP 110588, JCM 19399, KMM 7502, LMG 27497, LMG:27497, M. salarius, Marinobacter salarius Ng et al. 2015, Marinobacter sp. JCM 19399, Marinobacter sp. R9SW1, strain R9SW1
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