(14 nodes) Condensation domain network (Bacillus atrophaeus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	dltA-6	AMP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family. (2336 aa)
	AJF85153.1	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (3980 aa)
	dltA-7	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (3590 aa)
	srfAC	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1276 aa)
	dltA-4	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (5363 aa)
	dltA-3	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (2602 aa)
	ppsA	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (2560 aa)
	dltA-2	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (2577 aa)
	srfAA	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (2552 aa)
	dltA	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (3610 aa)
	ppsE	ATP-dependent isoleucine adenylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family. (1275 aa)
	pksN-2	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (5517 aa)
	pksN	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (5060 aa)
	dhbF	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (2394 aa)

Your Current Organism:

Bacillus atrophaeus

NCBI taxonomy Id: 1452
Other names: ATCC 49337, B. atrophaeus, Bacillus atriphaeus, Bacillus sp. S2 BC-2, Bacillus subtilis DSM 2277, Bacillus subtilis DSM 675, CCUG 28524, CIP 107159, DSM 7264, IFO 15539, JCM 9070, LMG 16797, LMG:16797, NBRC 15539, NRRL NRS-213

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJF85153.1	dhbF	TD68_06730	TD68_12900	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJF85153.1	dltA	TD68_06730	TD68_06595	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AJF85153.1	dltA-2	TD68_06730	TD68_06605	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
AJF85153.1	dltA-3	TD68_06730	TD68_06720	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJF85153.1	dltA-4	TD68_06730	TD68_06725	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJF85153.1	dltA-6	TD68_06730	TD68_18625	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	AMP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family.	0.949
AJF85153.1	dltA-7	TD68_06730	TD68_19420	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJF85153.1	pksN	TD68_06730	TD68_05845	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJF85153.1	pksN-2	TD68_06730	TD68_05860	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJF85153.1	ppsA	TD68_06730	TD68_06610	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AJF85153.1	ppsE	TD68_06730	TD68_06590	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent isoleucine adenylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family.	0.999
AJF85153.1	srfAA	TD68_06730	TD68_06600	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AJF85153.1	srfAC	TD68_06730	TD68_19430	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
dhbF	AJF85153.1	TD68_12900	TD68_06730	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
dhbF	dltA	TD68_12900	TD68_06595	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
dhbF	dltA-2	TD68_12900	TD68_06605	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
dhbF	dltA-3	TD68_12900	TD68_06720	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
dhbF	dltA-4	TD68_12900	TD68_06725	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
dhbF	dltA-6	TD68_12900	TD68_18625	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	AMP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family.	0.886
dhbF	dltA-7	TD68_12900	TD68_19420	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999

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