(5 nodes) Mixed, incl. E1-E2 ATPase, and 4Fe-4S binding domain network (Siansivirga zeaxanthinifaciens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJR03445.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
	AJR03446.1	Cytochrome Cbb3 oxidase maturation protein CcoH; Derived by automated computational analysis using gene prediction method: Protein Homology. (148 aa)
	AJR03447.1	Cytochrome C oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (474 aa)
	AJR03451.1	Cytochrome oxidase maturation protein Cbb3; Derived by automated computational analysis using gene prediction method: Protein Homology. (61 aa)
	AJR03452.1	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (791 aa)

Your Current Organism:

Siansivirga zeaxanthinifaciens

NCBI taxonomy Id: 1454006
Other names: S. zeaxanthinifaciens CC-SAMT-1, Siansivirga zeaxanthinifaciens CC-SAMT-1

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJR03445.1	AJR03446.1	AW14_07200	AW14_07205	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome Cbb3 oxidase maturation protein CcoH; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.950
AJR03445.1	AJR03447.1	AW14_07200	AW14_07210	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome C oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AJR03445.1	AJR03451.1	AW14_07200	AW14_07230	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome oxidase maturation protein Cbb3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.840
AJR03445.1	AJR03452.1	AW14_07200	AW14_07235	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.848
AJR03446.1	AJR03445.1	AW14_07205	AW14_07200	Cytochrome Cbb3 oxidase maturation protein CcoH; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.950
AJR03446.1	AJR03447.1	AW14_07205	AW14_07210	Cytochrome Cbb3 oxidase maturation protein CcoH; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome C oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.915
AJR03446.1	AJR03451.1	AW14_07205	AW14_07230	Cytochrome Cbb3 oxidase maturation protein CcoH; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome oxidase maturation protein Cbb3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.860
AJR03446.1	AJR03452.1	AW14_07205	AW14_07235	Cytochrome Cbb3 oxidase maturation protein CcoH; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.858
AJR03447.1	AJR03445.1	AW14_07210	AW14_07200	Cytochrome C oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AJR03447.1	AJR03446.1	AW14_07210	AW14_07205	Cytochrome C oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome Cbb3 oxidase maturation protein CcoH; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.915
AJR03447.1	AJR03451.1	AW14_07210	AW14_07230	Cytochrome C oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome oxidase maturation protein Cbb3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
AJR03447.1	AJR03452.1	AW14_07210	AW14_07235	Cytochrome C oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.883
AJR03451.1	AJR03445.1	AW14_07230	AW14_07200	Cytochrome oxidase maturation protein Cbb3; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.840
AJR03451.1	AJR03446.1	AW14_07230	AW14_07205	Cytochrome oxidase maturation protein Cbb3; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome Cbb3 oxidase maturation protein CcoH; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.860
AJR03451.1	AJR03447.1	AW14_07230	AW14_07210	Cytochrome oxidase maturation protein Cbb3; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome C oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
AJR03451.1	AJR03452.1	AW14_07230	AW14_07235	Cytochrome oxidase maturation protein Cbb3; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.928
AJR03452.1	AJR03445.1	AW14_07235	AW14_07200	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.848
AJR03452.1	AJR03446.1	AW14_07235	AW14_07205	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome Cbb3 oxidase maturation protein CcoH; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.858
AJR03452.1	AJR03447.1	AW14_07235	AW14_07210	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome C oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.883
AJR03452.1	AJR03451.1	AW14_07235	AW14_07230	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome oxidase maturation protein Cbb3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.928