(13 nodes) Tyrosinase activity network (Trichobilharzia regenti)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A183WMI1	Uncharacterized protein. (161 aa)
	TRE_LOCUS13581	Uncharacterized protein. (166 aa)
	TRE_LOCUS13735	Uncharacterized protein. (120 aa)
	A0A183WUI0	Uncharacterized protein. (95 aa)
	TRE_LOCUS16081	Uncharacterized protein. (118 aa)
	A0A183X6C7	Uncharacterized protein. (135 aa)
	TRE_LOCUS585	Tyrosinase_Cu-bd domain-containing protein. (60 aa)
	TRE_LOCUS8683	Tyrosinase_Cu-bd domain-containing protein. (338 aa)
	TRE_LOCUS1688	Uncharacterized protein. (460 aa)
	TRE_LOCUS123	Uncharacterized protein. (351 aa)
	TRE_LOCUS11243	Uncharacterized protein. (53 aa)
	TRE_LOCUS9883	Uncharacterized protein. (182 aa)
	TRE_LOCUS12478	Uncharacterized protein. (122 aa)

Your Current Organism:

Trichobilharzia regenti

NCBI taxonomy Id: 157069
Other names: T. regenti, bird nasal schistosome

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A183WMI1	A0A183WUI0	A0A183WMI1	A0A183WUI0	Uncharacterized protein.	Uncharacterized protein.	0.580
A0A183WMI1	A0A183X6C7	A0A183WMI1	A0A183X6C7	Uncharacterized protein.	Uncharacterized protein.	0.543
A0A183WMI1	TRE_LOCUS11243	A0A183WMI1	A0A183WGJ0	Uncharacterized protein.	Uncharacterized protein.	0.580
A0A183WMI1	TRE_LOCUS12478	A0A183WMI1	A0A183WK25	Uncharacterized protein.	Uncharacterized protein.	0.540
A0A183WMI1	TRE_LOCUS13735	A0A183WMI1	A0A183WNN2	Uncharacterized protein.	Uncharacterized protein.	0.539
A0A183WMI1	TRE_LOCUS585	A0A183WMI1	A0A183VKQ1	Uncharacterized protein.	Tyrosinase_Cu-bd domain-containing protein.	0.580
A0A183WUI0	A0A183WMI1	A0A183WUI0	A0A183WMI1	Uncharacterized protein.	Uncharacterized protein.	0.580
A0A183WUI0	A0A183X6C7	A0A183WUI0	A0A183X6C7	Uncharacterized protein.	Uncharacterized protein.	0.580
A0A183WUI0	TRE_LOCUS123	A0A183WUI0	A0A183VJD9	Uncharacterized protein.	Uncharacterized protein.	0.580
A0A183WUI0	TRE_LOCUS12478	A0A183WUI0	A0A183WK25	Uncharacterized protein.	Uncharacterized protein.	0.580
A0A183WUI0	TRE_LOCUS13581	A0A183WUI0	A0A183WN79	Uncharacterized protein.	Uncharacterized protein.	0.580
A0A183WUI0	TRE_LOCUS13735	A0A183WUI0	A0A183WNN2	Uncharacterized protein.	Uncharacterized protein.	0.580
A0A183WUI0	TRE_LOCUS16081	A0A183WUI0	A0A183WVC9	Uncharacterized protein.	Uncharacterized protein.	0.580
A0A183WUI0	TRE_LOCUS1688	A0A183WUI0	A0A183VMI2	Uncharacterized protein.	Uncharacterized protein.	0.820
A0A183WUI0	TRE_LOCUS8683	A0A183WUI0	A0A183W979	Uncharacterized protein.	Tyrosinase_Cu-bd domain-containing protein.	0.734
A0A183WUI0	TRE_LOCUS9883	A0A183WUI0	A0A183WCN0	Uncharacterized protein.	Uncharacterized protein.	0.580
A0A183X6C7	A0A183WMI1	A0A183X6C7	A0A183WMI1	Uncharacterized protein.	Uncharacterized protein.	0.543
A0A183X6C7	A0A183WUI0	A0A183X6C7	A0A183WUI0	Uncharacterized protein.	Uncharacterized protein.	0.580
A0A183X6C7	TRE_LOCUS11243	A0A183X6C7	A0A183WGJ0	Uncharacterized protein.	Uncharacterized protein.	0.580
A0A183X6C7	TRE_LOCUS13581	A0A183X6C7	A0A183WN79	Uncharacterized protein.	Uncharacterized protein.	0.543