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| | AEV29045.1 | PFAM: Sigma-54 factor, Activator interacting domain (AID); Sigma-54 factor, core binding domain; Sigma-54, DNA binding domain; TIGRFAM: RNA polymerase sigma-54 factor. (468 aa) |
| | AEV31020.1 | PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (217 aa) |
| | AEV31012.1 | PFAM: Transcriptional regulator; TIGRFAM: Rrf2 family protein. (138 aa) |
| | AEV31011.1 | PFAM: Transcriptional regulator; TIGRFAM: Rrf2 family protein. (135 aa) |
| | AEV31000.1 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; PFAM: Bacterial regulatory proteins, luxR family. (190 aa) |
| | AEV30976.1 | Hypothetical protein. (67 aa) |
| | cas1 | CRISPR-associated endonuclease Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (343 aa) |
| | dinB | nucleotidyltransferase/DNA polymerase involved in DNA repair; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. (394 aa) |
| | AEV30939.1 | PFAM: Bacterial regulatory proteins, lacI family. (331 aa) |
| | AEV30919.1 | PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (219 aa) |
| | AEV30915.1 | PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC-like ligand binding domain. (295 aa) |
| | AEV30885.1 | PFAM: Bacterial regulatory proteins, lacI family; family. (336 aa) |
| | AEV30833.1 | PFAM: Bacterial regulatory proteins, tetR family. (247 aa) |
| | AEV30807.1 | PFAM: Bacterial regulatory proteins, lacI family. (350 aa) |
| | uvrB | Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (689 aa) |
| | spoVG | Uncharacterized protein, involved in the regulation of septum location; Could be involved in septation. (94 aa) |
| | AEV30750.1 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; PFAM: Bacterial regulatory proteins, luxR family. (295 aa) |
| | AEV30733.1 | PFAM: Bacterial regulatory proteins, lacI family; family. (343 aa) |
| | AEV30725.1 | PFAM: Bacterial regulatory proteins, tetR family. (191 aa) |
| | AEV30670.1 | PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal. (230 aa) |
| | AEV30651.1 | PFAM: Bacterial regulatory proteins, tetR family; manually curated. (204 aa) |
| | AEV30636.1 | PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal. (240 aa) |
| | AEV30631.1 | PFAM: Bacterial regulatory proteins, tetR family. (194 aa) |
| | AEV30630.1 | PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb). (133 aa) |
| | AEV30629.1 | Hypothetical protein; Manually curated. (139 aa) |
| | AEV30628.1 | Site-specific recombinase, DNA invertase Pin; PFAM: Recombinase; Resolvase, N terminal domain. (524 aa) |
| | AEV30622.1 | Site-specific recombinase, DNA invertase Pin; PFAM: Recombinase; Resolvase, N terminal domain; manually curated. (239 aa) |
| | AEV30620.1 | Hypothetical protein. (295 aa) |
| | AEV30619.1 | PFAM: Type III restriction enzyme, res subunit. (1012 aa) |
| | AEV30618.1 | Adenine specific DNA methylase Mod; PFAM: DNA methylase. (632 aa) |
| | AEV30615.1 | Putative transcriptional regulator; PFAM: Helix-turn-helix. (127 aa) |
| | AEV30612.1 | Hypothetical protein. (163 aa) |
| | AEV30607.1 | PFAM: DNA polymerase family A. (646 aa) |
| | AEV30606.1 | Hypothetical protein. (143 aa) |
| | AEV30604.1 | Phage anti-repressor protein; PFAM: AntA/AntB antirepressor. (237 aa) |
| | AEV30599.1 | PFAM: Protein of unknown function (DUF1492). (136 aa) |
| | AEV30565.1 | PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal. (239 aa) |
| | AEV30554.1 | Hypothetical protein. (138 aa) |
| | AEV30553.1 | Hypothetical protein. (139 aa) |
| | AEV30551.1 | Site-specific recombinase, DNA invertase Pin; PFAM: Recombinase; Resolvase, N terminal domain. (434 aa) |
| | AEV30550.1 | Site-specific recombinase, DNA invertase Pin; PFAM: Recombinase; Resolvase, N terminal domain. (674 aa) |
| | AEV30546.1 | PFAM: Response regulator receiver domain; Bacterial regulatory helix-turn-helix proteins, AraC family. (529 aa) |
| | AEV30536.1 | PFAM: Response regulator receiver domain; Bacterial regulatory helix-turn-helix proteins, AraC family. (256 aa) |
| | AEV30530.1 | DNA-binding domain-containing protein, AraC-type; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family. (283 aa) |
| | AEV30524.1 | PFAM: Transcriptional regulator PadR-like family. (104 aa) |
| | AEV30508.1 | PFAM: Bacterial regulatory proteins, lacI family; family. (329 aa) |
| | AEV30505.1 | PFAM: Exonuclease; Exonuclease C-terminal. (471 aa) |
| | AEV30472.1 | Putative transcriptional regulator; PFAM: MarR family. (105 aa) |
| | AEV30465.1 | PFAM: Bacterial regulatory proteins, tetR family. (201 aa) |
| | topA | DNA topoisomerase I, bacterial; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removi [...] (852 aa) |
| | AEV30449.1 | Putative Rossmann fold nucleotide-binding protein involved in DNA uptake; PFAM: DNA recombination-mediator protein A; TIGRFAM: DNA protecting protein DprA. (318 aa) |
| | AEV30447.1 | Putative transcriptional regulator; PFAM: MerR family regulatory protein; TipAS antibiotic-recognition domain. (245 aa) |
| | AEV30438.1 | Transcriptional regulator of sugar metabolism; PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turn-helix domain. (250 aa) |
| | AEV30410.1 | PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (241 aa) |
| | AEV30404.1 | PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (240 aa) |
| | AEV30401.1 | PFAM: Bacterial regulatory proteins, lacI family; family. (360 aa) |
| | AEV30395.1 | PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal. (232 aa) |
| | AEV30376.1 | DNA/RNA helicase, superfamily I; PFAM: UvrD/REP helicase. (780 aa) |
| | AEV30359.1 | PFAM: Bacterial regulatory proteins, lacI family; family. (361 aa) |
| | AEV30348.1 | Transcriptional regulator of sugar metabolism; PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turn-helix domain. (251 aa) |
| | AEV30340.1 | PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC-like ligand binding domain. (289 aa) |
| | AEV30335.1 | ATP-dependent exonuclase V beta subunit, helicase and exonuclease domain-containing; PFAM: UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily. (1134 aa) |
| | AEV30334.1 | PFAM: Domain of unknown function DUF83. (874 aa) |
| | AEV30332.1 | PFAM: Bacterial regulatory proteins, lacI family; family. (331 aa) |
| | AEV30317.1 | PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain. (745 aa) |
| | AEV30316.1 | PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal. (229 aa) |
| | AEV30310.1 | PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (234 aa) |
| | AEV30304.1 | PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (225 aa) |
| | AEV30282.1 | Hypothetical protein. (235 aa) |
| | AEV30278.1 | Hypothetical protein. (469 aa) |
| | priA | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (658 aa) |
| | nfo | Apurinic endonuclease APN1; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. (279 aa) |
| | rex-2 | AT-rich DNA-binding protein; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state. (217 aa) |
| | AEV30234.1 | PFAM: Endonuclease/Exonuclease/phosphatase family. (337 aa) |
| | AEV30223.1 | Putative transcriptional regulator; PFAM: ParB-like nuclease domain. (335 aa) |
| | AEV30215.1 | Transposase; PFAM: Integrase core domain. (498 aa) |
| | AEV30213.1 | Transposase; PFAM: Integrase core domain. (518 aa) |
| | AEV30207.1 | DNA-binding domain-containing protein, AraC-type; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family. (428 aa) |
| | AEV30204.1 | Putative transcriptional regulator; PFAM: MerR family regulatory protein; Bacterial transcription activator, effector binding domain. (272 aa) |
| | AEV30195.1 | PFAM: Bacterial regulatory proteins, gntR family. (360 aa) |
| | AEV30189.1 | PFAM: Response regulator receiver domain; Bacterial regulatory helix-turn-helix proteins, AraC family. (502 aa) |
| | AEV30180.1 | Plasmid maintenance system antidote protein; PFAM: Helix-turn-helix; Domain of unknown function (DUF955); TIGRFAM: addiction module antidote protein, HigA family. (381 aa) |
| | AEV30175.1 | PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal. (232 aa) |
| | AEV30171.1 | Putative transcriptional regulator; PFAM: MerR family regulatory protein; MerR, DNA binding; Bacterial transcription activator, effector binding domain. (277 aa) |
| | AEV30167.1 | PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (218 aa) |
| | AEV30159.1 | PFAM: Putative RNA methylase family UPF0020. (312 aa) |
| | AEV30148.1 | Putative transcriptional regulator; PFAM: Helix-turn-helix. (76 aa) |
| | AEV30132.1 | PFAM: Bacterial regulatory proteins, lacI family; family. (340 aa) |
| | AEV30128.1 | DNA polymerase III epsilon subunit-like 3'-5' exonuclease; PFAM: Exonuclease. (166 aa) |
| | AEV30123.1 | DNA-binding domain-containing protein, AraC-type; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC-like ligand binding domain. (279 aa) |
| | AEV30114.1 | PFAM: Cyclic nucleotide-binding domain. (161 aa) |
| | AEV30096.1 | PFAM: Cyclic nucleotide-binding domain. (182 aa) |
| | AEV30088.1 | PFAM: Protein of unknown function (DUF1538). (488 aa) |
| | AEV30075.1 | PFAM: Bacterial regulatory proteins, tetR family. (366 aa) |
| | AEV30073.1 | Hypothetical protein; PFAM: YheO-like PAS domain. (209 aa) |
| | AEV30066.1 | PFAM: Transcriptional regulator PadR-like family. (308 aa) |
| | AEV30055.1 | DNA-binding domain-containing protein, AraC-type; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; Predicted histidine kinase sensor domain. (299 aa) |
| | AEV30053.1 | PFAM: Bacterial regulatory proteins, lacI family; family. (339 aa) |
| | AEV30018.1 | PFAM: Bacterial regulatory proteins, tetR family. (189 aa) |
| | AEV30013.1 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; PFAM: Bacterial regulatory proteins, luxR family. (324 aa) |
| | AEV29987.1 | cAMP-binding protein; PFAM: Cyclic nucleotide-binding domain. (223 aa) |
| | AEV29979.1 | DNA-binding domain-containing protein, AraC-type; PFAM: Bacterial transcription activator, effector binding domain. (290 aa) |
| | AEV29974.1 | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; PFAM: Bacterial regulatory proteins, luxR family. (307 aa) |
| | AEV29963.1 | Bacterial nucleoid DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. (106 aa) |
| | AEV29949.1 | Hypothetical protein. (408 aa) |
| | rpoA | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (350 aa) |
| | rpoC | DNA-directed RNA polymerase, beta'' subunit, predominant form; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1427 aa) |
| | rpoB | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1172 aa) |
| | nusG | Transcription termination/antitermination factor NusG; Participates in transcription elongation, termination and antitermination. (186 aa) |
| | AEV29891.1 | PFAM: Bacterial regulatory proteins, tetR family. (209 aa) |
| | rex | AT-rich DNA-binding protein; Modulates transcription in response to changes in cellular NADH/NAD(+) redox state. (223 aa) |
| | argR | Arginine repressor; Regulates arginine biosynthesis genes. (156 aa) |
| | recG | ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. (696 aa) |
| | AEV29832.1 | Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains; PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain; TIGRFAM: psp operon transcriptional activator PspF. (332 aa) |
| | AEV29810.1 | PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (243 aa) |
| | AEV29802.1 | PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (215 aa) |
| | AEV29793.1 | Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains; PFAM: Sigma-54 interaction domain; Propionate catabolism activator. (629 aa) |
| | AEV29785.1 | PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (244 aa) |
| | AEV29784.1 | PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (249 aa) |
| | AEV29768.1 | PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family. (1083 aa) |
| | AEV29763.1 | Transcriptional regulator; PFAM: IclR helix-turn-helix domain; Bacterial transcriptional regulator. (261 aa) |
| | dnaX | DNA polymerase III, subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (537 aa) |
| | AEV29737.1 | DNA-binding protein, YbaB/EbfC family; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (105 aa) |
| | recR | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (196 aa) |
| | radA | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (453 aa) |
| | AEV29720.1 | ParB-like partition protein; PFAM: ParB-like nuclease domain; Helix-turn-helix; TIGRFAM: ParB-like partition proteins; Belongs to the ParB family. (320 aa) |
| | gyrA | DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (843 aa) |
| | AEV29716.1 | DNA gyrase, B subunit; PFAM: Toprim domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase B subunit, carboxyl terminus; TIGRFAM: DNA gyrase, B subunit. (675 aa) |
| | dnaA | Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. (472 aa) |
| | AEV29714.1 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] (368 aa) |
| | recF | recF protein; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. (363 aa) |
| | AEV29700.1 | Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains; PFAM: Sigma-54 interaction domain; manually curated. (374 aa) |
| | AEV29694.1 | cAMP-binding protein; PFAM: Cyclic nucleotide-binding domain. (205 aa) |
| | AEV29692.1 | PFAM: Bacterial regulatory proteins, lacI family; family. (355 aa) |
| | AEV29677.1 | Putative endoIII-related endonuclease; PFAM: HhH-GPD superfamily base excision DNA repair protein; TIGRFAM: endonuclease III. (220 aa) |
| | AEV29671.1 | PFAM: Bacterial regulatory proteins, lacI family; family. (343 aa) |
| | AEV29659.1 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; DNA gyrase B; DNA gyrase B subunit, carboxyl terminus. (600 aa) |
| | AEV29658.1 | PFAM: DNA gyrase/topoisomerase IV, subunit A. (657 aa) |
| | AEV29644.1 | PFAM: Response regulator receiver domain; Bacterial regulatory helix-turn-helix proteins, AraC family. (550 aa) |
| | AEV29624.1 | PFAM: Bacterial regulatory proteins, lacI family; family; manually curated. (332 aa) |
| | AEV29621.1 | PFAM: Response regulator receiver domain; Bacterial regulatory helix-turn-helix proteins, AraC family. (270 aa) |
| | AEV29612.1 | PFAM: Transcriptional regulator PadR-like family. (114 aa) |
| | AEV29589.1 | Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family. (742 aa) |
| | AEV29577.1 | PFAM: Bacterial regulatory proteins, gntR family; UTRA domain. (276 aa) |
| | AEV29558.1 | DNA-binding domain-containing protein, AraC-type; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family. (477 aa) |
| | AEV29555.1 | PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (236 aa) |
| | AEV29542.1 | PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (221 aa) |
| | AEV29532.1 | PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (222 aa) |
| | AEV29521.1 | Putative transcriptional regulator; PFAM: Helix-turn-helix. (81 aa) |
| | AEV29519.1 | Transcriptional regulator; PFAM: IclR helix-turn-helix domain; Bacterial transcriptional regulator. (261 aa) |
| | AEV29506.1 | cAMP-binding protein; PFAM: Cyclic nucleotide-binding domain. (229 aa) |
| | AEV29493.1 | DNA-binding domain-containing protein, AraC-type; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC-like ligand binding domain. (277 aa) |
| | AEV29490.1 | PFAM: Bacterial regulatory proteins, lacI family; family. (334 aa) |
| | AEV29472.1 | PFAM: Transcription termination factor nusG. (176 aa) |
| | AEV29458.1 | Site-specific recombinase XerD; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family. (398 aa) |
| | AEV29457.1 | Site-specific recombinase XerD; PFAM: Phage integrase family. (320 aa) |
| | AEV29456.1 | Site-specific recombinase XerD; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; manually curated; Belongs to the 'phage' integrase family. (338 aa) |
| | AEV29437.1 | Hypothetical protein. (197 aa) |
| | AEV29435.1 | Mg chelatase-related protein; PFAM: Magnesium chelatase, subunit ChlI; TIGRFAM: Mg chelatase-related protein. (512 aa) |
| | AEV29434.1 | Putative Rossmann fold nucleotide-binding protein involved in DNA uptake; PFAM: DNA recombination-mediator protein A; TIGRFAM: DNA protecting protein DprA; manually curated. (373 aa) |
| | AEV29433.1 | PFAM: Transposase IS200 like. (268 aa) |
| | AEV29427.1 | PFAM: Response regulator receiver domain; Bacterial regulatory helix-turn-helix proteins, AraC family. (529 aa) |
| | AEV29424.1 | Hypothetical protein. (381 aa) |
| | AEV29415.1 | Hypothetical protein. (451 aa) |
| | AEV29414.1 | Putative transcriptional regulator; PFAM: Helix-turn-helix. (384 aa) |
| | AEV29412.1 | PFAM: Bacterial regulatory proteins, lacI family. (363 aa) |
| | AEV29357.1 | PFAM: Bacterial regulatory proteins, lacI family; family. (333 aa) |
| | AEV29341.1 | PFAM: Bacterial regulatory proteins, lacI family. (347 aa) |
| | AEV29340.1 | Transcriptional regulator of sugar metabolism; PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turn-helix domain. (256 aa) |
| | AEV29326.1 | PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (245 aa) |
| | AEV29314.1 | PFAM: Bacterial regulatory proteins, lacI family; family. (339 aa) |
| | AEV29309.1 | PFAM: Bacterial regulatory proteins, gntR family. (369 aa) |
| | AEV29287.1 | Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family. (414 aa) |
| | AEV29282.1 | DNA-binding domain-containing protein, AraC-type; PFAM: AraC-like ligand binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family. (287 aa) |
| | AEV29277.1 | PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (239 aa) |
| | AEV29264.1 | PFAM: Bacterial regulatory proteins, lacI family; family. (336 aa) |
| | AEV29262.1 | PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (230 aa) |
| | AEV29245.1 | PFAM: Response regulator receiver domain; Bacterial regulatory helix-turn-helix proteins, AraC family. (494 aa) |
| | AEV29240.1 | PFAM: Bacterial regulatory proteins, lacI family. (346 aa) |
| | AEV29232.1 | Transcriptional regulator of sugar metabolism; PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turn-helix domain. (252 aa) |
| | AEV29178.1 | Transcriptional regulator of sugar metabolism; PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turn-helix domain. (261 aa) |
| | AEV29168.1 | Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family. (732 aa) |
| | AEV29147.1 | PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (235 aa) |
| | AEV29135.1 | PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (233 aa) |
| | AEV29101.1 | Hypothetical protein. (141 aa) |
| | AEV29099.1 | Putative transcriptional regulator; PFAM: MerR family regulatory protein; MerR, DNA binding. (148 aa) |
| | AEV29066.1 | Putative transcriptional regulator; PFAM: Helix-turn-helix; Peptidase S24-like. (238 aa) |
| | AEV29064.1 | PFAM: DNA methylase. (432 aa) |
| | uvrC | Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. (615 aa) |
| | AEV29050.1 | PFAM: DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit. (349 aa) |
| | AEV29049.1 | SOS regulatory protein LexA; Represses a number of genes involved in the response to DNA damage (SOS response). (206 aa) |
| | AEV29018.1 | Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain. (451 aa) |
| | polA | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (960 aa) |
| | AEV28996.1 | DNA segregation ATPase, FtsK/SpoIIIE family; PFAM: Ftsk gamma domain; FtsK/SpoIIIE family; Belongs to the FtsK/SpoIIIE/SftA family. (947 aa) |
| | AEV28981.1 | PFAM: Bacterial regulatory proteins, gntR family; UTRA domain. (242 aa) |
| | AEV28973.1 | DNA polymerase III epsilon subunit-like 3'-5' exonuclease; PFAM: Exonuclease. (195 aa) |
| | AEV28962.1 | A/G-specific DNA glycosylase; PFAM: HhH-GPD superfamily base excision DNA repair protein. (294 aa) |
| | AEV28929.1 | Site-specific recombinase XerD; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; Belongs to the 'phage' integrase family. (398 aa) |
| | AEV28928.1 | Site-specific recombinase XerD; PFAM: Phage integrase family. (320 aa) |
| | AEV28927.1 | Site-specific recombinase XerD; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; Belongs to the 'phage' integrase family. (339 aa) |
| | AEV28926.1 | Hypothetical protein; Belongs to the 'phage' integrase family. (190 aa) |
| | AEV28919.1 | PFAM: AraC-like ligand binding domain; Bacterial regulatory helix-turn-helix proteins, AraC family. (263 aa) |
| | AEV28912.1 | PFAM: Trp repressor protein; TIGRFAM: trp operon repressor, proteobacterial. (95 aa) |
| | AEV28873.1 | Mn-dependent transcriptional regulator; PFAM: Iron dependent repressor, metal binding and dimerisation domain; Iron dependent repressor, N-terminal DNA binding domain. (125 aa) |
| | AEV28868.1 | PFAM: Response regulator receiver domain; Bacterial regulatory helix-turn-helix proteins, AraC family. (256 aa) |
| | AEV28856.1 | Putative transcriptional regulator; PFAM: Helix-turn-helix. (89 aa) |
| | AEV28848.1 | PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal. (243 aa) |
| | AEV28847.1 | PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal. (241 aa) |
| | AEV28841.1 | PFAM: Bacterial regulatory proteins, lacI family; family. (335 aa) |
| | AEV28800.1 | PFAM: Bacterial regulatory proteins, lacI family; family. (342 aa) |
| | AEV28764.1 | PFAM: Bacterial regulatory proteins, lacI family; family. (338 aa) |
| | AEV28758.1 | PFAM: Bacterial regulatory proteins, lacI family; family. (345 aa) |
| | AEV28736.1 | PFAM: Uracil DNA glycosylase superfamily. (160 aa) |
| | AEV28732.1 | PFAM: Bacterial regulatory proteins, lacI family. (354 aa) |
| | AEV28721.1 | PFAM: Bacterial regulatory proteins, tetR family. (239 aa) |
| | AEV28720.1 | Hypothetical protein. (224 aa) |
| | AEV28697.1 | Plasmid maintenance system antidote protein; PFAM: Helix-turn-helix. (122 aa) |
| | AEV28696.1 | PFAM: Restriction endonuclease. (283 aa) |
| | AEV28694.1 | PFAM: Bacterial regulatory proteins, tetR family. (206 aa) |
| | AEV28689.1 | PFAM: Purine catabolism regulatory protein-like family. (509 aa) |
| | AEV28680.1 | DNA/RNA helicase, superfamily II; PFAM: Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit; Domain of unknown function (DUF3427). (990 aa) |
| | AEV28661.1 | PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain. (241 aa) |
| | AEV28624.1 | PFAM: MgsA AAA+ ATPase C terminal; Holliday junction DNA helicase ruvB N-terminus. (761 aa) |
| | AEV28605.1 | PFAM: Toprim domain; DNA topoisomerase; TIGRFAM: DNA topoisomerase III, bacteria and conjugative plasmid. (794 aa) |
| | AEV28583.1 | PFAM: Bacterial regulatory proteins, tetR family. (189 aa) |
| | AEV28546.1 | Exodeoxyribonuclease III; PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III (xth). (271 aa) |
| | AEV28534.1 | DNA/RNA helicase, superfamily I; PFAM: UvrD/REP helicase. (671 aa) |
| | AEV28496.1 | PFAM: Single-strand binding protein family; TIGRFAM: single stranded DNA-binding protein (ssb). (161 aa) |
| | AEV28492.1 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (461 aa) |
| | AEV28480.1 | DNA/RNA helicase, superfamily II; PFAM: Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit. (553 aa) |
| | nrdR | Transcriptional regulator NrdR; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family. (154 aa) |
| | mfd | Transcription-repair coupling factor Mfd; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1096 aa) |
| | AEV28467.1 | Putative transcriptional regulator; PFAM: Helix-turn-helix. (107 aa) |
| | AEV28458.1 | Putative ATPase with chaperone activity; PFAM: Magnesium chelatase, subunit ChlI. (463 aa) |
| | mraZ | PFAM: MraZ protein; TIGRFAM: mraZ protein; Belongs to the MraZ family. (151 aa) |
| | xerC | Site-specific recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (302 aa) |
| | AEV28436.1 | Putative Rossmann fold nucleotide-binding protein involved in DNA uptake; PFAM: DNA recombination-mediator protein A. (295 aa) |
| | AEV28435.1 | Site-specific recombinase XerD; PFAM: Phage integrase, N-terminal SAM-like domain; Phage integrase family; Belongs to the 'phage' integrase family. (323 aa) |
| | AEV28419.1 | PFAM: Bacterial regulatory proteins, lacI family; family. (324 aa) |
| | AEV28413.1 | PFAM: Bacterial regulatory proteins, lacI family; family. (340 aa) |
| | AEV28409.1 | Hypothetical protein. (396 aa) |
| | AEV28407.1 | Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain. (453 aa) |
| | AEV28406.1 | DNA helicase, Rad3; PFAM: DEAD_2; TIGRFAM: DnaQ family exonuclease/DinG family helicase, putative. (698 aa) |
| | AEV28402.1 | RNA polymerase sigma factor, sigma-70 family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (294 aa) |
| | AEV28401.1 | Transcriptional regulator; PFAM: IclR helix-turn-helix domain; Bacterial transcriptional regulator. (259 aa) |
| | AEV28385.1 | Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains; PFAM: Sigma-54 interaction domain; Propionate catabolism activator; PAS fold. (608 aa) |
| | AEV28372.1 | cAMP-binding protein; PFAM: Cyclic nucleotide-binding domain. (230 aa) |
| | AEV28365.1 | DNA-binding domain-containing protein, AraC-type; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; AraC-like ligand binding domain. (273 aa) |
| | AEV28358.1 | PFAM: Protein of unknown function (DUF3276). (83 aa) |
| | smc | RecF/RecN/SMC N-terminal domain-containing protein; Required for chromosome condensation and partitioning. Belongs to the SMC family. (949 aa) |
| | dnaG | DNA primase, catalytic core; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (598 aa) |
| | rpoD | RNA polymerase sigma factor, sigma-70 family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (685 aa) |
| | recA | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (358 aa) |
| | greA | Uncharacterized protein, N-terminal domain of transcription elongation factor GreA like protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. (906 aa) |
| | AEV28263.1 | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. (869 aa) |
| | ruvB | Holliday junction DNA helicase, RuvB subunit; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (356 aa) |
| | ruvA | Holliday junction DNA helicase, RuvA subunit; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (210 aa) |
| | AEV28255.1 | PFAM: Domain of unknown function DUF28; TIGRFAM: DNA-binding regulatory protein, YebC/PmpR family. (249 aa) |
| | AEV28250.1 | Site-specific recombinase XerD; PFAM: Phage integrase family; Belongs to the 'phage' integrase family. (404 aa) |
| | AEV28245.1 | PFAM: SpoVT / AbrB like domain; TIGRFAM: looped-hinge helix DNA binding domain, AbrB family. (65 aa) |
| | AEV28237.1 | PFAM: Response regulator receiver domain; Bacterial regulatory helix-turn-helix proteins, AraC family. (525 aa) |
| | AEV28231.1 | Cupin domain-containing protein; PFAM: Cupin domain. (162 aa) |
| | uvrA | Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (944 aa) |
| | mutS2 | Mismatch repair ATPase (MutS family); Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. (782 aa) |
| | AEV28175.1 | PFAM: Bacterial regulatory proteins, lacI family; family. (356 aa) |
| | AEV28147.1 | PFAM: Sugar-specific transcriptional regulator TrmB. (269 aa) |
| | AEV28144.1 | DNA-binding domain-containing protein, AraC-type; PFAM: Cupin domain; Bacterial regulatory helix-turn-helix proteins, AraC family. (273 aa) |
| | AEV28143.1 | DNA-binding domain-containing protein, AraC-type. (707 aa) |
| | AEV28132.1 | PFAM: Uncharacterized conserved protein (DUF2132). (86 aa) |
| | AEV28117.1 | Transcriptional regulator of sugar metabolism; PFAM: Bacterial regulatory proteins, deoR family; DeoR-like helix-turn-helix domain. (249 aa) |
| | AEV28108.1 | nucleotidyltransferase/DNA polymerase involved in DNA repair; PFAM: impB/mucB/samB family. (391 aa) |
| | AEV28100.1 | PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family. (219 aa) |
| | AEV28069.1 | PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (222 aa) |
| | AEV28054.1 | PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal. (240 aa) |
| | AEV28050.1 | PFAM: Bacterial regulatory proteins, lacI family; family. (334 aa) |
| | AEV28018.1 | Hypothetical protein. (514 aa) |
| | AEV28012.1 | PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (213 aa) |
| | AEV28006.1 | PFAM: Bacterial regulatory proteins, tetR family. (215 aa) |
| | mutL | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. (588 aa) |
| | AEV27992.1 | Transcriptional regulator; PFAM: HTH domain; AsnC family. (151 aa) |
| | lon | ATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. (821 aa) |
| | AEV27975.1 | PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. (172 aa) |
| | AEV27968.1 | PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal. (225 aa) |
| | AEV27918.1 | PFAM: Bacterial regulatory proteins, tetR family. (216 aa) |
| | AEV27911.1 | Response regulator of the LytR/AlgR family; PFAM: Response regulator receiver domain; LytTr DNA-binding domain. (245 aa) |
| | AEV27908.1 | Putative transcriptional regulator; PFAM: Helix-turn-helix. (73 aa) |
| | AEV27906.1 | PFAM: Bacterial regulatory proteins, lacI family. (327 aa) |
| | nth | Putative endoIII-related endonuclease; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (215 aa) |
| | AEV27897.1 | Transcriptional regulator; PFAM: IclR helix-turn-helix domain; Bacterial transcriptional regulator. (320 aa) |
| | AEV27886.1 | Putative transcriptional regulator; PFAM: MerR family regulatory protein. (254 aa) |
