STRINGSTRING
KHD22922.1 KHD22922.1 ubiD ubiD ubiG ubiG KHD22057.1 KHD22057.1 KHD21783.1 KHD21783.1 ubiA ubiA KHD20994.1 KHD20994.1 ubiX-2 ubiX-2 KHD19744.1 KHD19744.1 KHD19217.1 KHD19217.1 KHD18962.1 KHD18962.1 ubiX-3 ubiX-3 KHD18862.1 KHD18862.1 KHD18863.1 KHD18863.1 KHD18716.1 KHD18716.1 KHD18717.1 KHD18717.1 coq7 coq7 ubiE ubiE ubiB ubiB KHD17385.1 KHD17385.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
KHD22922.1Endoribonuclease L-PSP; Derived by automated computational analysis using gene prediction method: Protein Homology. (125 aa)
ubiD3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis. (529 aa)
ubiG3-demethylubiquinone-9 3-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family. (232 aa)
KHD22057.1Phosphoheptose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (85 aa)
KHD21783.1Methyltransferase type 11; Derived by automated computational analysis using gene prediction method: Protein Homology. (271 aa)
ubiA4-hydroxybenzoate polyprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate. (288 aa)
KHD20994.1Ubiquinone biosynthesis protein UbiH; Derived by automated computational analysis using gene prediction method: Protein Homology. (429 aa)
ubiX-23-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. (195 aa)
KHD19744.1Decarboxylase UbiD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UbiD family. (474 aa)
KHD19217.1Iron transporter; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes. (91 aa)
KHD18962.1Ubiquinone biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (390 aa)
ubiX-33-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. (196 aa)
KHD18862.1Protein RnfH; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0125 (RnfH) family. (111 aa)
KHD18863.1Cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (147 aa)
KHD18716.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (246 aa)
KHD18717.1Alpha-ketoglutarate permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (421 aa)
coq72-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis. (224 aa)
ubiEUbiquinone biosynthesis methyltransferase UbiE; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2). (243 aa)
ubiBUbiquinone biosynthesis protein UbiB; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis. (525 aa)
KHD17385.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (400 aa)
Your Current Organism:
Paraburkholderia sacchari
NCBI taxonomy Id: 159450
Other names: Burkholderia sacchari, Burkholderia sacchari Bramer et al. 2001, CCT 6771, CCUG 46043, CIP 107211, DSM 17165, IPT 101, LMG 19450, LMG:19450, P. sacchari, Paraburkholderia sacchari (Braner et al. 2001) Sawana et al. 2015
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