(31 nodes) Ribosomal subunit network (Pseudoalteromonas telluritireducens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KYL32176.1	50S ribosomal protein L22; Derived by automated computational analysis using gene prediction method: Protein Homology. (110 aa)
	KYL32177.1	30S ribosomal protein S3; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
	rpmD	50S ribosomal protein L30; L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; Derived by automated computational analysis using gene prediction method: Protein Homology. (60 aa)
	KYL35452.1	30S ribosomal protein S5; Derived by automated computational analysis using gene prediction method: Protein Homology. (168 aa)
	KYL35453.1	50S ribosomal protein L18; Derived by automated computational analysis using gene prediction method: Protein Homology. (116 aa)
	KYL35454.1	50S ribosomal protein L6; Derived by automated computational analysis using gene prediction method: Protein Homology. (177 aa)
	KYL35455.1	30S ribosomal protein S8; Derived by automated computational analysis using gene prediction method: Protein Homology. (130 aa)
	rpsN	30S ribosomal protein S14; Located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; Derived by automated computational analysis using gene prediction method: Protein Homology. (101 aa)
	KYL35541.1	50S ribosomal protein L5; Derived by automated computational analysis using gene prediction method: Protein Homology. (179 aa)
	KYL35458.1	50S ribosomal protein L14; Derived by automated computational analysis using gene prediction method: Protein Homology. (122 aa)
	rplU	50S ribosomal protein L21; Derived by automated computational analysis using gene prediction method: Protein Homology. (103 aa)
	KYL34988.1	50S ribosomal protein L25/general stress protein Ctc; Derived by automated computational analysis using gene prediction method: Protein Homology. (204 aa)
	KYL34458.1	30S ribosomal protein S30; Derived by automated computational analysis using gene prediction method: Protein Homology. (118 aa)
	rpsA	30S ribosomal protein S1; In Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; Derived by automated computational analysis using gene prediction method: Protein Homology. (555 aa)
	A2I98_13510	Two-component system response regulator; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (86 aa)
	A2I98_13910	Type I methionyl aminopeptidase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (242 aa)
	KYL32575.1	30S ribosomal protein S7; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)
	rplL	50S ribosomal protein L7/L12; Present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; Derived by automated computational analysis using gene prediction method: Protein Homology. (120 aa)
	KYL32180.1	30S ribosomal protein S17; Derived by automated computational analysis using gene prediction method: Protein Homology. (85 aa)
	rpmF	Some L32 proteins have zinc finger motifs consisting of CXXC while others do not; Derived by automated computational analysis using gene prediction method: Protein Homology. (56 aa)
	KYL32580.1	50S ribosomal protein L10; Derived by automated computational analysis using gene prediction method: Protein Homology. (164 aa)
	KYL32581.1	50S ribosomal protein L1; Derived by automated computational analysis using gene prediction method: Protein Homology. (234 aa)
	KYL32171.1	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology. (211 aa)
	rplD	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology. (201 aa)
	rplW	50S ribosomal protein L23; Binds third domain of 23S rRNA and protein L29; part of exit tunnel; Derived by automated computational analysis using gene prediction method: Protein Homology. (100 aa)
	KYL31776.1	30S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology. (89 aa)
	KYL32174.1	50S ribosomal protein L2; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)
	KYL32175.1	30S ribosomal protein S19; Derived by automated computational analysis using gene prediction method: Protein Homology. (92 aa)
	KYL30822.1	50S ribosomal protein L31; Derived by automated computational analysis using gene prediction method: Protein Homology. (87 aa)
	A2I98_06730	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (206 aa)
	KYL35450.1	50S ribosomal protein L15; Derived by automated computational analysis using gene prediction method: Protein Homology. (144 aa)

Your Current Organism:

Pseudoalteromonas telluritireducens

NCBI taxonomy Id: 162160
Other names: DSM 16098, P. telluritireducens, Pseudoalteromonas sp. Se-1-2-red, Pseudoalteromonas sp. Te-1-1, VKM B-2382, strain Se-1-2-red

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A2I98_06730	A2I98_13510	A2I98_06730	A2I98_13510	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system response regulator; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
A2I98_06730	A2I98_13910	A2I98_06730	A2I98_13910	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type I methionyl aminopeptidase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_06730	KYL30822.1	A2I98_06730	A2I98_04820	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L31; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
A2I98_06730	KYL31776.1	A2I98_06730	A2I98_01865	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_06730	KYL32171.1	A2I98_06730	A2I98_18430	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_06730	KYL32174.1	A2I98_06730	A2I98_18445	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_06730	KYL32175.1	A2I98_06730	A2I98_18450	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S19; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_06730	KYL32176.1	A2I98_06730	A2I98_18455	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L22; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_06730	KYL32177.1	A2I98_06730	A2I98_18460	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_06730	KYL32180.1	A2I98_06730	A2I98_18475	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S17; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_06730	KYL32575.1	A2I98_06730	A2I98_16640	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S7; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_06730	KYL32580.1	A2I98_06730	A2I98_16665	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L10; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_06730	KYL32581.1	A2I98_06730	A2I98_16670	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_06730	KYL34458.1	A2I98_06730	A2I98_10605	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S30; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.964
A2I98_06730	KYL34988.1	A2I98_06730	A2I98_08400	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L25/general stress protein Ctc; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
A2I98_06730	KYL35450.1	A2I98_06730	A2I98_06755	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L15; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_06730	KYL35452.1	A2I98_06730	A2I98_06765	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S5; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_06730	KYL35453.1	A2I98_06730	A2I98_06770	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L18; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_06730	KYL35454.1	A2I98_06730	A2I98_06775	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L6; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_06730	KYL35455.1	A2I98_06730	A2I98_06780	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S8; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999

page 1 of 47

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About