(5 nodes) L28p-like, and Ribosomal protein network (Peptococcaceae bacterium BRHc4b)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rpmH	50S ribosomal protein L34; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL34 family. (44 aa)
	rpsT	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. (89 aa)
	rpsU	30S ribosomal protein S21; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bS21 family. (58 aa)
	rpmE	50S ribosomal protein L31; Binds the 23S rRNA. (72 aa)
	rpmB	50S ribosomal protein L28; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL28 family. (63 aa)

Your Current Organism:

Peptococcaceae bacterium BRHc4b

NCBI taxonomy Id: 1629717
Other names: P. bacterium BRH_c4b, Peptococcaceae bacterium BRH_c4b

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rpmB	rpmE	VR69_12495	VR69_06670	50S ribosomal protein L28; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL28 family.	50S ribosomal protein L31; Binds the 23S rRNA.	0.995
rpmB	rpmH	VR69_12495	VR69_01690	50S ribosomal protein L28; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL28 family.	50S ribosomal protein L34; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL34 family.	0.994
rpmB	rpsT	VR69_12495	VR69_02210	50S ribosomal protein L28; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL28 family.	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.995
rpmB	rpsU	VR69_12495	VR69_02295	50S ribosomal protein L28; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL28 family.	30S ribosomal protein S21; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bS21 family.	0.994
rpmE	rpmB	VR69_06670	VR69_12495	50S ribosomal protein L31; Binds the 23S rRNA.	50S ribosomal protein L28; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL28 family.	0.995
rpmE	rpmH	VR69_06670	VR69_01690	50S ribosomal protein L31; Binds the 23S rRNA.	50S ribosomal protein L34; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL34 family.	0.971
rpmE	rpsT	VR69_06670	VR69_02210	50S ribosomal protein L31; Binds the 23S rRNA.	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.994
rpmE	rpsU	VR69_06670	VR69_02295	50S ribosomal protein L31; Binds the 23S rRNA.	30S ribosomal protein S21; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bS21 family.	0.984
rpmH	rpmB	VR69_01690	VR69_12495	50S ribosomal protein L34; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL34 family.	50S ribosomal protein L28; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL28 family.	0.994
rpmH	rpmE	VR69_01690	VR69_06670	50S ribosomal protein L34; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL34 family.	50S ribosomal protein L31; Binds the 23S rRNA.	0.971
rpmH	rpsT	VR69_01690	VR69_02210	50S ribosomal protein L34; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL34 family.	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.994
rpmH	rpsU	VR69_01690	VR69_02295	50S ribosomal protein L34; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL34 family.	30S ribosomal protein S21; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bS21 family.	0.989
rpsT	rpmB	VR69_02210	VR69_12495	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	50S ribosomal protein L28; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL28 family.	0.995
rpsT	rpmE	VR69_02210	VR69_06670	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	50S ribosomal protein L31; Binds the 23S rRNA.	0.994
rpsT	rpmH	VR69_02210	VR69_01690	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	50S ribosomal protein L34; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL34 family.	0.994
rpsT	rpsU	VR69_02210	VR69_02295	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	30S ribosomal protein S21; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bS21 family.	0.994
rpsU	rpmB	VR69_02295	VR69_12495	30S ribosomal protein S21; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bS21 family.	50S ribosomal protein L28; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL28 family.	0.994
rpsU	rpmE	VR69_02295	VR69_06670	30S ribosomal protein S21; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bS21 family.	50S ribosomal protein L31; Binds the 23S rRNA.	0.984
rpsU	rpmH	VR69_02295	VR69_01690	30S ribosomal protein S21; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bS21 family.	50S ribosomal protein L34; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL34 family.	0.989
rpsU	rpsT	VR69_02295	VR69_02210	30S ribosomal protein S21; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bS21 family.	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.994