(34 nodes) Mixed, incl. Cyclic nucleotide-dependent protein kinase activity, and cAMP binding network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3G8D1_PHYRM	Uncharacterized protein. (330 aa)
	H3G8L5_PHYRM	Uncharacterized protein; Belongs to the protein kinase superfamily. (327 aa)
	H3G992_PHYRM	Uncharacterized protein; Belongs to the protein kinase superfamily. (334 aa)
	H3GD22_PHYRM	Uncharacterized protein. (733 aa)
	H3GEM6_PHYRM	Uncharacterized protein. (1077 aa)
	H3GEZ0_PHYRM	Guanylate cyclase domain-containing protein. (564 aa)
	H3GEZ6_PHYRM	Guanylate cyclase domain-containing protein. (630 aa)
	H3GEZ7_PHYRM	Guanylate cyclase domain-containing protein. (529 aa)
	H3GF28_PHYRM	Guanylate cyclase domain-containing protein. (636 aa)
	H3GFR0_PHYRM	Uncharacterized protein. (809 aa)
	H3GG60_PHYRM	Uncharacterized protein. (405 aa)
	H3GHA6_PHYRM	Uncharacterized protein. (458 aa)
	H3GI52_PHYRM	Uncharacterized protein; Belongs to the protein kinase superfamily. (450 aa)
	H3GIQ4_PHYRM	Uncharacterized protein. (370 aa)
	H3GKF7_PHYRM	Uncharacterized protein. (753 aa)
	H3GLF7_PHYRM	Guanylate cyclase domain-containing protein. (788 aa)
	H3GLS8_PHYRM	Cyclic nucleotide-binding domain-containing protein. (511 aa)
	H3GRK7_PHYRM	Uncharacterized protein. (277 aa)
	H3GSR0_PHYRM	Uncharacterized protein. (1847 aa)
	H3GTR3_PHYRM	Uncharacterized protein. (665 aa)
	H3GU80_PHYRM	Uncharacterized protein. (827 aa)
	H3GXK0_PHYRM	Guanylate cyclase domain-containing protein. (561 aa)
	H3H0E6_PHYRM	Uncharacterized protein. (236 aa)
	H3H125_PHYRM	Uncharacterized protein. (761 aa)
	H3H192_PHYRM	Uncharacterized protein. (171 aa)
	H3H2A7_PHYRM	Uncharacterized protein. (2043 aa)
	H3H515_PHYRM	Uncharacterized protein. (568 aa)
	H3H5F2_PHYRM	Uncharacterized protein. (154 aa)
	H3H816_PHYRM	Uncharacterized protein. (660 aa)
	H3H8K5_PHYRM	Uncharacterized protein. (143 aa)
	H3HAY1_PHYRM	Uncharacterized protein. (306 aa)
	H3HCB7_PHYRM	Uncharacterized protein. (1074 aa)
	H3HCM2_PHYRM	Uncharacterized protein. (395 aa)
	H3HDH9_PHYRM	Cyclic nucleotide-binding domain-containing protein. (442 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

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... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G8D1_PHYRM	H3G8L5_PHYRM	H3G8D1	H3G8L5	Uncharacterized protein.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.571
H3G8D1_PHYRM	H3G992_PHYRM	H3G8D1	H3G992	Uncharacterized protein.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.568
H3G8D1_PHYRM	H3GD22_PHYRM	H3G8D1	H3GD22	Uncharacterized protein.	Uncharacterized protein.	0.858
H3G8D1_PHYRM	H3GEM6_PHYRM	H3G8D1	H3GEM6	Uncharacterized protein.	Uncharacterized protein.	0.543
H3G8D1_PHYRM	H3GEZ0_PHYRM	H3G8D1	H3GEZ0	Uncharacterized protein.	Guanylate cyclase domain-containing protein.	0.413
H3G8D1_PHYRM	H3GEZ6_PHYRM	H3G8D1	H3GEZ6	Uncharacterized protein.	Guanylate cyclase domain-containing protein.	0.413
H3G8D1_PHYRM	H3GEZ7_PHYRM	H3G8D1	H3GEZ7	Uncharacterized protein.	Guanylate cyclase domain-containing protein.	0.413
H3G8D1_PHYRM	H3GF28_PHYRM	H3G8D1	H3GF28	Uncharacterized protein.	Guanylate cyclase domain-containing protein.	0.413
H3G8D1_PHYRM	H3GFR0_PHYRM	H3G8D1	H3GFR0	Uncharacterized protein.	Uncharacterized protein.	0.847
H3G8D1_PHYRM	H3GG60_PHYRM	H3G8D1	H3GG60	Uncharacterized protein.	Uncharacterized protein.	0.846
H3G8D1_PHYRM	H3GHA6_PHYRM	H3G8D1	H3GHA6	Uncharacterized protein.	Uncharacterized protein.	0.667
H3G8D1_PHYRM	H3GI52_PHYRM	H3G8D1	H3GI52	Uncharacterized protein.	Uncharacterized protein; Belongs to the protein kinase superfamily.	0.601
H3G8D1_PHYRM	H3GIQ4_PHYRM	H3G8D1	H3GIQ4	Uncharacterized protein.	Uncharacterized protein.	0.953
H3G8D1_PHYRM	H3GKF7_PHYRM	H3G8D1	H3GKF7	Uncharacterized protein.	Uncharacterized protein.	0.413
H3G8D1_PHYRM	H3GLF7_PHYRM	H3G8D1	H3GLF7	Uncharacterized protein.	Guanylate cyclase domain-containing protein.	0.413
H3G8D1_PHYRM	H3GLS8_PHYRM	H3G8D1	H3GLS8	Uncharacterized protein.	Cyclic nucleotide-binding domain-containing protein.	0.765
H3G8D1_PHYRM	H3GRK7_PHYRM	H3G8D1	H3GRK7	Uncharacterized protein.	Uncharacterized protein.	0.765
H3G8D1_PHYRM	H3GSR0_PHYRM	H3G8D1	H3GSR0	Uncharacterized protein.	Uncharacterized protein.	0.581
H3G8D1_PHYRM	H3GTR3_PHYRM	H3G8D1	H3GTR3	Uncharacterized protein.	Uncharacterized protein.	0.765
H3G8D1_PHYRM	H3GU80_PHYRM	H3G8D1	H3GU80	Uncharacterized protein.	Uncharacterized protein.	0.853

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