(54 nodes) Macroautophagy network (Phytophthora ramorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H3H4G3_PHYRM	Uncharacterized protein. (255 aa)
	H3GPE9_PHYRM	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy. (705 aa)
	H3GPC6_PHYRM	Autophagy-related protein 3. (331 aa)
	H3GMY0_PHYRM	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family. (740 aa)
	H3GMG2_PHYRM	Uncharacterized protein. (342 aa)
	H3GMD9_PHYRM	Uncharacterized protein. (210 aa)
	H3GM26_PHYRM	Uncharacterized protein. (431 aa)
	H3GKQ3_PHYRM	Autophagy_act_C domain-containing protein. (185 aa)
	H3GKJ2_PHYRM	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (1011 aa)
	H3GIW4_PHYRM	WD_REPEATS_REGION domain-containing protein. (408 aa)
	H3GIJ0_PHYRM	DJ-1_PfpI domain-containing protein. (190 aa)
	H3GFX8_PHYRM	TPR_REGION domain-containing protein. (1279 aa)
	H3GFE9_PHYRM	Uncharacterized protein. (386 aa)
	H3GF06_PHYRM	Autophagy protein 5; Involved in autophagic vesicle formation. (289 aa)
	H3GDQ5_PHYRM	Uncharacterized protein. (256 aa)
	H3GCB0_PHYRM	EF-hand domain-containing protein. (212 aa)
	H3GB62_PHYRM	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (322 aa)
	H3GAV8_PHYRM	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family. (450 aa)
	H3GAF7_PHYRM	WD_REPEATS_REGION domain-containing protein. (293 aa)
	H3GAE2_PHYRM	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (348 aa)
	H3G9Y4_PHYRM	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (453 aa)
	H3G9Y0_PHYRM	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family. (452 aa)
	H3G9X9_PHYRM	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family. (452 aa)
	H3G9P1_PHYRM	Uncharacterized protein. (232 aa)
	H3G9J2_PHYRM	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (220 aa)
	H3G8X4_PHYRM	Autophagy-related protein. (116 aa)
	H3G8T9_PHYRM	Ubiquitin-like domain-containing protein. (164 aa)
	H3G7E9_PHYRM	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (446 aa)
	H3G7E7_PHYRM	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family. (450 aa)
	H3G783_PHYRM	Uncharacterized protein. (321 aa)
	H3G6F5_PHYRM	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (373 aa)
	H3G5Z2_PHYRM	WD_REPEATS_REGION domain-containing protein. (1226 aa)
	H3GQD6_PHYRM	Uncharacterized protein. (250 aa)
	H3HEG2_PHYRM	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (291 aa)
	H3H8T9_PHYRM	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family. (347 aa)
	H3H7R5_PHYRM	Uncharacterized protein. (379 aa)
	H3H3A8_PHYRM	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (962 aa)
	H3H1K0_PHYRM	Uncharacterized protein. (235 aa)
	H3H174_PHYRM	DJ-1_PfpI domain-containing protein. (217 aa)
	H3H0L8_PHYRM	ATG13 domain-containing protein. (852 aa)
	H3H028_PHYRM	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (777 aa)
	H3GZI9_PHYRM	Uncharacterized protein. (454 aa)
	H3GYP6_PHYRM	N_BRCA1_IG domain-containing protein. (251 aa)
	H3GYM4_PHYRM	Uncharacterized protein. (2040 aa)
	H3GY00_PHYRM	WW domain-containing protein. (837 aa)
	H3GUM6_PHYRM	Uncharacterized protein. (233 aa)
	H3GUM5_PHYRM	Uncharacterized protein. (213 aa)
	H3GTH1_PHYRM	Uncharacterized protein. (513 aa)
	H3GTD0_PHYRM	DJ-1_PfpI domain-containing protein. (143 aa)
	H3GT89_PHYRM	DJ-1_PfpI domain-containing protein. (200 aa)
	H3GT88_PHYRM	DJ-1_PfpI domain-containing protein. (208 aa)
	H3GSZ4_PHYRM	Uncharacterized protein. (1474 aa)
	H3GS62_PHYRM	Uncharacterized protein. (565 aa)
	H3GRM6_PHYRM	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (568 aa)

Your Current Organism:

Phytophthora ramorum

NCBI taxonomy Id: 164328
Other names: BBA 9/95, CBS 101553, CPHST BL 55G, Ex-type CPHST BL 55G, P. ramorum, Phytophthora sp. ex Parrotia persica, Sudden oak death agent, WPC P10103, ramorum blight, sudden oak death

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3G5Z2_PHYRM	H3G783_PHYRM	H3G5Z2	H3G783	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.980
H3G5Z2_PHYRM	H3GAF7_PHYRM	H3G5Z2	H3GAF7	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
H3G5Z2_PHYRM	H3GPE9_PHYRM	H3G5Z2	H3GPE9	WD_REPEATS_REGION domain-containing protein.	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	0.431
H3G5Z2_PHYRM	H3GQD6_PHYRM	H3G5Z2	H3GQD6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.932
H3G5Z2_PHYRM	H3H0L8_PHYRM	H3G5Z2	H3H0L8	WD_REPEATS_REGION domain-containing protein.	ATG13 domain-containing protein.	0.921
H3G5Z2_PHYRM	H3H7R5_PHYRM	H3G5Z2	H3H7R5	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.719
H3G6F5_PHYRM	H3G8X4_PHYRM	H3G6F5	H3G8X4	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Autophagy-related protein.	0.589
H3G6F5_PHYRM	H3GFX8_PHYRM	H3G6F5	H3GFX8	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	TPR_REGION domain-containing protein.	0.753
H3G6F5_PHYRM	H3GMG2_PHYRM	H3G6F5	H3GMG2	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.696
H3G783_PHYRM	H3G5Z2_PHYRM	H3G783	H3G5Z2	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.980
H3G783_PHYRM	H3GAF7_PHYRM	H3G783	H3GAF7	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.906
H3G783_PHYRM	H3GQD6_PHYRM	H3G783	H3GQD6	Uncharacterized protein.	Uncharacterized protein.	0.666
H3G783_PHYRM	H3H7R5_PHYRM	H3G783	H3H7R5	Uncharacterized protein.	Uncharacterized protein.	0.658
H3G7E7_PHYRM	H3H4G3_PHYRM	H3G7E7	H3H4G3	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	Uncharacterized protein.	0.560
H3G7E9_PHYRM	H3H4G3_PHYRM	H3G7E9	H3H4G3	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Uncharacterized protein.	0.560
H3G8T9_PHYRM	H3G8X4_PHYRM	H3G8T9	H3G8X4	Ubiquitin-like domain-containing protein.	Autophagy-related protein.	0.716
H3G8T9_PHYRM	H3G9P1_PHYRM	H3G8T9	H3G9P1	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.670
H3G8T9_PHYRM	H3GFX8_PHYRM	H3G8T9	H3GFX8	Ubiquitin-like domain-containing protein.	TPR_REGION domain-containing protein.	0.731
H3G8T9_PHYRM	H3GIJ0_PHYRM	H3G8T9	H3GIJ0	Ubiquitin-like domain-containing protein.	DJ-1_PfpI domain-containing protein.	0.587
H3G8T9_PHYRM	H3GPE9_PHYRM	H3G8T9	H3GPE9	Ubiquitin-like domain-containing protein.	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	0.772

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