10 items (Jatropha curcas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	JCGZ_09212	Protein kinase domain-containing protein. (1061 aa)
	JCGZ_01105	Uncharacterized protein. (254 aa)
	JCGZ_05829	Rhodanese domain-containing protein. (392 aa)
	JCGZ_08160	Phospholipase D; Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. (854 aa)
	JCGZ_17362	Exocyst subunit Exo70 family protein; Component of the exocyst complex. (640 aa)
	WRKY56	WRKY transcription factor 56. (327 aa)
	WRKY57	WRKY transcription factor 57.2. (290 aa)
	JCGZ_21146	Uncharacterized protein. (256 aa)
	JCGZ_20723	Uncharacterized protein. (560 aa)
	JCGZ_04969	Phospholipase D; Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond. (855 aa)

Your Current Organism:

Jatropha curcas

NCBI taxonomy Id: 180498
Other names: J. curcas, Jatropha curcas L.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
JCGZ_01105	JCGZ_21146	A0A067KWJ7	A0A067JKZ9	Uncharacterized protein.	Uncharacterized protein.	0.901
JCGZ_04969	JCGZ_08160	A0A067KRS1	A0A067KYD8	Phospholipase D; Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond.	Phospholipase D; Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond.	0.655
JCGZ_08160	JCGZ_04969	A0A067KYD8	A0A067KRS1	Phospholipase D; Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond.	Phospholipase D; Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond.	0.655
JCGZ_09212	JCGZ_20723	A0A067KSV1	A0A067JNV2	Protein kinase domain-containing protein.	Uncharacterized protein.	0.584
JCGZ_20723	JCGZ_09212	A0A067JNV2	A0A067KSV1	Uncharacterized protein.	Protein kinase domain-containing protein.	0.584
JCGZ_21146	JCGZ_01105	A0A067JKZ9	A0A067KWJ7	Uncharacterized protein.	Uncharacterized protein.	0.901