(47 nodes) Mixed, incl. HlyD family secretion protein, and Outer membrane efflux protein network (Muricauda sp. CP2A)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_001683915_00065	Unannotated protein. (245 aa)
	GCA_001683915_00247	Unannotated protein. (220 aa)
	GCA_001683915_00248	Unannotated protein. (799 aa)
	GCA_001683915_00249	Unannotated protein. (810 aa)
	GCA_001683915_00250	Unannotated protein. (811 aa)
	GCA_001683915_00251	Unannotated protein. (231 aa)
	GCA_001683915_00252	Unannotated protein. (416 aa)
	GCA_001683915_00253	Unannotated protein. (446 aa)
	GCA_001683915_01142	Unannotated protein. (1457 aa)
	GCA_001683915_01143	Unannotated protein. (399 aa)
	GCA_001683915_01144	Unannotated protein. (138 aa)
	GCA_001683915_01145	Unannotated protein. (665 aa)
	GCA_001683915_01651	Unannotated protein. (1051 aa)
	GCA_001683915_01652	Unannotated protein. (402 aa)
	GCA_001683915_01653	Unannotated protein. (472 aa)
	GCA_001683915_01806	Unannotated protein. (446 aa)
	GCA_001683915_01807	Unannotated protein. (354 aa)
	GCA_001683915_01808	Unannotated protein. (1056 aa)
	GCA_001683915_01878	Unannotated protein. (414 aa)
	GCA_001683915_01879	Unannotated protein. (418 aa)
	GCA_001683915_01880	Unannotated protein. (369 aa)
	GCA_001683915_01881	Unannotated protein. (233 aa)
	GCA_001683915_01882	Unannotated protein. (410 aa)
	GCA_001683915_01883	Unannotated protein. (420 aa)
	GCA_001683915_01884	Unannotated protein. (372 aa)
	GCA_001683915_01885	Unannotated protein. (465 aa)
	GCA_001683915_01971	Unannotated protein. (1056 aa)
	GCA_001683915_01972	Unannotated protein. (354 aa)
	GCA_001683915_01973	Unannotated protein. (446 aa)
	GCA_001683915_02268	Unannotated protein. (1164 aa)
	GCA_001683915_02269	Unannotated protein. (394 aa)
	GCA_001683915_02270	Unannotated protein. (443 aa)
	GCA_001683915_02271	Unannotated protein. (201 aa)
	GCA_001683915_02272	Unannotated protein. (141 aa)
	GCA_001683915_02273	Unannotated protein. (181 aa)
	GCA_001683915_02279	Unannotated protein. (375 aa)
	GCA_001683915_02280	Unannotated protein. (1449 aa)
	GCA_001683915_02281	Unannotated protein. (132 aa)
	GCA_001683915_02488	Unannotated protein. (436 aa)
	GCA_001683915_02489	Unannotated protein. (1032 aa)
	GCA_001683915_02490	Unannotated protein. (358 aa)
	GCA_001683915_02996	Unannotated protein. (327 aa)
	GCA_001683915_02997	Unannotated protein. (1088 aa)
	GCA_001683915_02998	Unannotated protein. (475 aa)
	GCA_001683915_03528	Unannotated protein. (365 aa)
	GCA_001683915_03529	Unannotated protein. (420 aa)
	GCA_001683915_03530	Unannotated protein. (225 aa)

Your Current Organism:

Muricauda sp. CP2A

NCBI taxonomy Id: 1848189
Other names: M. sp. CP2A

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_001683915_00065	GCA_001683915_00248	Unannotated protein.	Unannotated protein.	0.640
GCA_001683915_00065	GCA_001683915_00249	Unannotated protein.	Unannotated protein.	0.983
GCA_001683915_00065	GCA_001683915_00250	Unannotated protein.	Unannotated protein.	0.983
GCA_001683915_00065	GCA_001683915_00251	Unannotated protein.	Unannotated protein.	0.428
GCA_001683915_00065	GCA_001683915_00252	Unannotated protein.	Unannotated protein.	0.706
GCA_001683915_00065	GCA_001683915_00253	Unannotated protein.	Unannotated protein.	0.683
GCA_001683915_00065	GCA_001683915_01142	Unannotated protein.	Unannotated protein.	0.690
GCA_001683915_00065	GCA_001683915_01143	Unannotated protein.	Unannotated protein.	0.706
GCA_001683915_00065	GCA_001683915_01652	Unannotated protein.	Unannotated protein.	0.706
GCA_001683915_00065	GCA_001683915_01653	Unannotated protein.	Unannotated protein.	0.683
GCA_001683915_00065	GCA_001683915_01806	Unannotated protein.	Unannotated protein.	0.683
GCA_001683915_00065	GCA_001683915_01807	Unannotated protein.	Unannotated protein.	0.706
GCA_001683915_00065	GCA_001683915_01878	Unannotated protein.	Unannotated protein.	0.934
GCA_001683915_00065	GCA_001683915_01879	Unannotated protein.	Unannotated protein.	0.908
GCA_001683915_00065	GCA_001683915_01880	Unannotated protein.	Unannotated protein.	0.714
GCA_001683915_00065	GCA_001683915_01882	Unannotated protein.	Unannotated protein.	0.919
GCA_001683915_00065	GCA_001683915_01883	Unannotated protein.	Unannotated protein.	0.938
GCA_001683915_00065	GCA_001683915_01884	Unannotated protein.	Unannotated protein.	0.714
GCA_001683915_00065	GCA_001683915_01885	Unannotated protein.	Unannotated protein.	0.683
GCA_001683915_00065	GCA_001683915_01972	Unannotated protein.	Unannotated protein.	0.706