STRINGSTRING
rplC rplC Mlg_0459 Mlg_0459 Mlg_0460 Mlg_0460 rplB rplB rpsS rpsS rplV rplV rpsC rpsC rplP rplP Mlg_0466 Mlg_0466 Mlg_0467 Mlg_0467 rplN rplN Mlg_0469 Mlg_0469 rplE rplE Mlg_0471 Mlg_0471 Mlg_0472 Mlg_0472 Mlg_0473 Mlg_0473 Mlg_0474 Mlg_0474 Mlg_0475 Mlg_0475 rpmD rpmD rplO rplO Mlg_0478 Mlg_0478 rpsM rpsM
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rplCLSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. (218 aa)
Mlg_0459PFAM: ribosomal protein L4/L1e; KEGG: ilo:IL1923 ribosomal protein L4. (205 aa)
Mlg_0460PFAM: Ribosomal protein L25/L23; KEGG: pha:PSHAa0146 50S ribosomal protein L23. (99 aa)
rplBLSU ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (274 aa)
rpsSSSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (90 aa)
rplVLSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (111 aa)
rpsCSSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (226 aa)
rplPLSU ribosomal protein L16P; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. (137 aa)
Mlg_0466PFAM: ribosomal protein L29; KEGG: csa:Csal_0429 ribosomal protein L29. (65 aa)
Mlg_0467PFAM: ribosomal protein S17; KEGG: ppu:PP0463 ribosomal protein S17. (87 aa)
rplNLSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa)
Mlg_0469KEGG: eba:ebB128 50S ribosomal protein L24; TIGRFAM: ribosomal protein L24; PFAM: KOW domain protein; SMART: KOW (Kyrpides, Ouzounis, Woese) domain protein. (106 aa)
rplELSU ribosomal protein L5P; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (179 aa)
Mlg_0471PFAM: ribosomal protein S14; KEGG: csa:Csal_0434 ribosomal protein S14. (101 aa)
Mlg_0472PFAM: ribosomal protein S8; KEGG: tbd:Tbd_0419 ribosomal protein S8. (131 aa)
Mlg_0473PFAM: ribosomal protein L6; KEGG: ppu:PP0469 ribosomal protein L6. (177 aa)
Mlg_0474TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: csa:Csal_0437 ribosomal protein L18. (117 aa)
Mlg_0475PFAM: ribosomal protein S5; ribosomal protein S5 domain protein; KEGG: noc:Noc_2307 ribosomal protein S5. (166 aa)
rpmDPFAM: ribosomal protein L30; KEGG: tcx:Tcr_0313 ribosomal protein L30. (62 aa)
rplOLSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (144 aa)
Mlg_0478TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; KEGG: noc:Noc_2305 SecY protein. (447 aa)
rpsMSSU ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. (119 aa)
Your Current Organism:
Alkalilimnicola ehrlichii
NCBI taxonomy Id: 187272
Other names: A. ehrlichii MLHE-1, Alkalilimnicola ehrlichii MLHE-1, Alkalilimnicola ehrlichii str. MLHE-1, Alkalilimnicola ehrlichii strain MLHE-1, Mono Lake Gammaproteobacter MLHE-1, arsenite-oxidizing bacterium MLHE-1, gamma proteobacterium MLHE-1
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