(21 nodes) Mixed, incl. Xenobiotic transport, and CMP kinase activity network (Lachnospiraceae bacterium)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SKB45940.1	Uncharacterized radical SAM protein YgiQ. (613 aa)
	SKB45951.1	Cytidylate kinase. (201 aa)
	SKB45977.1	NUDIX domain-containing protein. (176 aa)
	SKB45993.1	Hypothetical protein. (43 aa)
	SKB46039.1	Permease of the drug/metabolite transporter (DMT) superfamily. (307 aa)
	SKB46060.1	Cation diffusion facilitator family transporter. (387 aa)
	SKB59870.1	PAP2 superfamily protein. (229 aa)
	SKB66997.1	Putative efflux protein, MATE family. (457 aa)
	SKB63433.1	Ig-like domain (group 2). (570 aa)
	SKB63455.1	Putative efflux protein, MATE family. (455 aa)
	SKB63462.1	Metal-dependent hydrolase, beta-lactamase superfamily II. (299 aa)
	SKB63615.1	Hypothetical protein. (495 aa)
	SKB63628.1	Putative efflux protein, MATE family. (450 aa)
	SKB63649.1	Putative efflux protein, MATE family. (451 aa)
	SKB63658.1	Hypothetical protein. (538 aa)
	SKB71684.1	Cytidylate kinase. (218 aa)
	SKB91689.1	Hypothetical protein. (280 aa)
	SKB91702.1	Putative efflux protein, MATE family. (450 aa)
	SKC00624.1	8-oxo-dGTP diphosphatase. (367 aa)
	SKC00925.1	Peptidase family M41. (194 aa)
	SKC00943.1	Putative efflux protein, MATE family. (454 aa)

Your Current Organism:

Lachnospiraceae bacterium

NCBI taxonomy Id: 1898203
Other names: L. bacterium

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SKB45940.1	SKB45951.1	SAMN06296386_10154	SAMN06296386_10155	Uncharacterized radical SAM protein YgiQ.	Cytidylate kinase.	0.773
SKB45940.1	SKB45977.1	SAMN06296386_10154	SAMN06296386_10156	Uncharacterized radical SAM protein YgiQ.	NUDIX domain-containing protein.	0.773
SKB45940.1	SKB45993.1	SAMN06296386_10154	SAMN06296386_10157	Uncharacterized radical SAM protein YgiQ.	Hypothetical protein.	0.427
SKB45951.1	SKB45940.1	SAMN06296386_10155	SAMN06296386_10154	Cytidylate kinase.	Uncharacterized radical SAM protein YgiQ.	0.773
SKB45951.1	SKB45977.1	SAMN06296386_10155	SAMN06296386_10156	Cytidylate kinase.	NUDIX domain-containing protein.	0.773
SKB45951.1	SKB45993.1	SAMN06296386_10155	SAMN06296386_10157	Cytidylate kinase.	Hypothetical protein.	0.427
SKB45951.1	SKB63455.1	SAMN06296386_10155	SAMN06296386_10365	Cytidylate kinase.	Putative efflux protein, MATE family.	0.829
SKB45951.1	SKC00943.1	SAMN06296386_10155	SAMN06296386_11351	Cytidylate kinase.	Putative efflux protein, MATE family.	0.643
SKB45977.1	SKB45940.1	SAMN06296386_10156	SAMN06296386_10154	NUDIX domain-containing protein.	Uncharacterized radical SAM protein YgiQ.	0.773
SKB45977.1	SKB45951.1	SAMN06296386_10156	SAMN06296386_10155	NUDIX domain-containing protein.	Cytidylate kinase.	0.773
SKB45977.1	SKB45993.1	SAMN06296386_10156	SAMN06296386_10157	NUDIX domain-containing protein.	Hypothetical protein.	0.427
SKB45993.1	SKB45940.1	SAMN06296386_10157	SAMN06296386_10154	Hypothetical protein.	Uncharacterized radical SAM protein YgiQ.	0.427
SKB45993.1	SKB45951.1	SAMN06296386_10157	SAMN06296386_10155	Hypothetical protein.	Cytidylate kinase.	0.427
SKB45993.1	SKB45977.1	SAMN06296386_10157	SAMN06296386_10156	Hypothetical protein.	NUDIX domain-containing protein.	0.427
SKB46039.1	SKB46060.1	SAMN06296386_10159	SAMN06296386_10160	Permease of the drug/metabolite transporter (DMT) superfamily.	Cation diffusion facilitator family transporter.	0.783
SKB46060.1	SKB46039.1	SAMN06296386_10160	SAMN06296386_10159	Cation diffusion facilitator family transporter.	Permease of the drug/metabolite transporter (DMT) superfamily.	0.783
SKB59870.1	SKB63455.1	SAMN06296386_102385	SAMN06296386_10365	PAP2 superfamily protein.	Putative efflux protein, MATE family.	0.618
SKB59870.1	SKB63628.1	SAMN06296386_102385	SAMN06296386_10374	PAP2 superfamily protein.	Putative efflux protein, MATE family.	0.618
SKB59870.1	SKB63649.1	SAMN06296386_102385	SAMN06296386_10376	PAP2 superfamily protein.	Putative efflux protein, MATE family.	0.618
SKB59870.1	SKB66997.1	SAMN06296386_102385	SAMN06296386_103312	PAP2 superfamily protein.	Putative efflux protein, MATE family.	0.618