(19 nodes) Phenylalanine metabolism network (Caulobacter vibrioides CB15)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CC_0353	Identified by match to PFAM protein family HMM PF00378. (286 aa)
	CC_0715	3-hydroxybutyryl-CoA dehydrogenase; Identified by match to PFAM protein family HMM PF00725. (292 aa)
	CC_1071	Histidinol-phosphate aminotransferase, putative; Identified by match to protein family HMM. (409 aa)
	CC_1352	Identified by match to PFAM protein family HMM PF00378. (350 aa)
	CC_1509	2-keto-4-pentenoate hydratase, putative; Identified by match to protein family HMM. (272 aa)
	CC_1534	Aspartate aminotransferase; Identified by match to protein family HMM. (400 aa)
	phhA	Phenylalanine-4-hydroxylase; Identified by match to protein family HMM. (294 aa)
	CC_1723	Identified by match to PFAM protein family HMM PF00378. (256 aa)
	CC_1744	D-alanine aminotransferase, putative; Identified by match to PFAM protein family HMM PF01063. (287 aa)
	CC_1814	Identified by match to PFAM protein family HMM PF00378. (275 aa)
	CC_1851	Identified by match to PFAM protein family HMM PF00378. (267 aa)
	hisC1	Histidinol-phosphate aminotransferase; Identified by match to protein family HMM; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. (359 aa)
	CC_2396	Benzyl-alcohol dehydrogenase; Identified by match to protein family HMM. (366 aa)
	CC_2473	Identified by match to PFAM protein family HMM PF01425. (497 aa)
	CC_2533	4-hydroxyphenylpyruvate dioxygenase; Identified by match to protein family HMM. (357 aa)
	hisC2	Histidinol-phosphate aminotransferase; Identified by match to protein family HMM; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. (378 aa)
	CC_2793	Amine oxidase, flavin-containing; Identified by match to PFAM protein family HMM PF01593. (541 aa)
	katG	Catalase/peroxidase; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity (By similarity). Important for stationary phase survival; Belongs to the peroxidase family. Peroxidase/catalase subfamily. (737 aa)
	CC_3525	Ferredoxin reductase; Identified by match to protein family HMM. (412 aa)

Your Current Organism:

Caulobacter vibrioides CB15

NCBI taxonomy Id: 190650
Other names: C. vibrioides CB15, Caulobacter crescentus CB15, Caulobacter vibrioides ATCC 19089

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CC_0353	CC_0715	CC_0353	CC_0715	Identified by match to PFAM protein family HMM PF00378.	3-hydroxybutyryl-CoA dehydrogenase; Identified by match to PFAM protein family HMM PF00725.	0.993
CC_0353	CC_1352	CC_0353	CC_1352	Identified by match to PFAM protein family HMM PF00378.	Identified by match to PFAM protein family HMM PF00378.	0.619
CC_0353	CC_1723	CC_0353	CC_1723	Identified by match to PFAM protein family HMM PF00378.	Identified by match to PFAM protein family HMM PF00378.	0.537
CC_0353	CC_1851	CC_0353	CC_1851	Identified by match to PFAM protein family HMM PF00378.	Identified by match to PFAM protein family HMM PF00378.	0.952
CC_0715	CC_0353	CC_0715	CC_0353	3-hydroxybutyryl-CoA dehydrogenase; Identified by match to PFAM protein family HMM PF00725.	Identified by match to PFAM protein family HMM PF00378.	0.993
CC_0715	CC_1352	CC_0715	CC_1352	3-hydroxybutyryl-CoA dehydrogenase; Identified by match to PFAM protein family HMM PF00725.	Identified by match to PFAM protein family HMM PF00378.	0.928
CC_0715	CC_1723	CC_0715	CC_1723	3-hydroxybutyryl-CoA dehydrogenase; Identified by match to PFAM protein family HMM PF00725.	Identified by match to PFAM protein family HMM PF00378.	0.997
CC_0715	CC_1814	CC_0715	CC_1814	3-hydroxybutyryl-CoA dehydrogenase; Identified by match to PFAM protein family HMM PF00725.	Identified by match to PFAM protein family HMM PF00378.	0.996
CC_0715	CC_1851	CC_0715	CC_1851	3-hydroxybutyryl-CoA dehydrogenase; Identified by match to PFAM protein family HMM PF00725.	Identified by match to PFAM protein family HMM PF00378.	0.982
CC_1071	CC_1534	CC_1071	CC_1534	Histidinol-phosphate aminotransferase, putative; Identified by match to protein family HMM.	Aspartate aminotransferase; Identified by match to protein family HMM.	0.818
CC_1071	CC_1744	CC_1071	CC_1744	Histidinol-phosphate aminotransferase, putative; Identified by match to protein family HMM.	D-alanine aminotransferase, putative; Identified by match to PFAM protein family HMM PF01063.	0.921
CC_1071	CC_2533	CC_1071	CC_2533	Histidinol-phosphate aminotransferase, putative; Identified by match to protein family HMM.	4-hydroxyphenylpyruvate dioxygenase; Identified by match to protein family HMM.	0.911
CC_1071	hisC1	CC_1071	CC_2223	Histidinol-phosphate aminotransferase, putative; Identified by match to protein family HMM.	Histidinol-phosphate aminotransferase; Identified by match to protein family HMM; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.	0.928
CC_1071	hisC2	CC_1071	CC_2534	Histidinol-phosphate aminotransferase, putative; Identified by match to protein family HMM.	Histidinol-phosphate aminotransferase; Identified by match to protein family HMM; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.	0.927
CC_1071	katG	CC_1071	CC_3043	Histidinol-phosphate aminotransferase, putative; Identified by match to protein family HMM.	Catalase/peroxidase; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity (By similarity). Important for stationary phase survival; Belongs to the peroxidase family. Peroxidase/catalase subfamily.	0.904
CC_1071	phhA	CC_1071	CC_1612	Histidinol-phosphate aminotransferase, putative; Identified by match to protein family HMM.	Phenylalanine-4-hydroxylase; Identified by match to protein family HMM.	0.906
CC_1352	CC_0353	CC_1352	CC_0353	Identified by match to PFAM protein family HMM PF00378.	Identified by match to PFAM protein family HMM PF00378.	0.619
CC_1352	CC_0715	CC_1352	CC_0715	Identified by match to PFAM protein family HMM PF00378.	3-hydroxybutyryl-CoA dehydrogenase; Identified by match to PFAM protein family HMM PF00725.	0.928
CC_1352	CC_1723	CC_1352	CC_1723	Identified by match to PFAM protein family HMM PF00378.	Identified by match to PFAM protein family HMM PF00378.	0.765
CC_1352	CC_1814	CC_1352	CC_1814	Identified by match to PFAM protein family HMM PF00378.	Identified by match to PFAM protein family HMM PF00378.	0.640