(5 nodes) Dihydroprymidine dehydrogenase domain II network (Chlorobaculum tepidum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CT0854	Iron-sulfur cluster-binding protein, gltD family; Identified by match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992. (577 aa)
	CT0282	Glutamate synthase, small subunit, putative; Identified by similarity to EGAD:37434; match to protein family HMM PF00070; match to protein family HMM PF07992. (582 aa)
	gltD-2	Glutamate synthase, small subunit; Identified by similarity to EGAD:142506; match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01317. (490 aa)
	gltD-1	Glutamate synthase, small subunit; Identified by similarity to EGAD:37434; match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01316. (472 aa)
	CT2247	Iron-sulfur cluster-binding protein, gltD family; Identified by match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992. (577 aa)

Your Current Organism:

Chlorobaculum tepidum

NCBI taxonomy Id: 194439
Other names: C. tepidum TLS, Chlorobaculum tepidum TLS, Chlorobium tepidum TLS

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CT0282	CT0854	CT0282	CT0854	Glutamate synthase, small subunit, putative; Identified by similarity to EGAD:37434; match to protein family HMM PF00070; match to protein family HMM PF07992.	Iron-sulfur cluster-binding protein, gltD family; Identified by match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992.	0.487
CT0282	CT2247	CT0282	CT2247	Glutamate synthase, small subunit, putative; Identified by similarity to EGAD:37434; match to protein family HMM PF00070; match to protein family HMM PF07992.	Iron-sulfur cluster-binding protein, gltD family; Identified by match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992.	0.487
CT0282	gltD-1	CT0282	CT0473	Glutamate synthase, small subunit, putative; Identified by similarity to EGAD:37434; match to protein family HMM PF00070; match to protein family HMM PF07992.	Glutamate synthase, small subunit; Identified by similarity to EGAD:37434; match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01316.	0.919
CT0282	gltD-2	CT0282	CT0402	Glutamate synthase, small subunit, putative; Identified by similarity to EGAD:37434; match to protein family HMM PF00070; match to protein family HMM PF07992.	Glutamate synthase, small subunit; Identified by similarity to EGAD:142506; match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01317.	0.925
CT0854	CT0282	CT0854	CT0282	Iron-sulfur cluster-binding protein, gltD family; Identified by match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992.	Glutamate synthase, small subunit, putative; Identified by similarity to EGAD:37434; match to protein family HMM PF00070; match to protein family HMM PF07992.	0.487
CT0854	gltD-2	CT0854	CT0402	Iron-sulfur cluster-binding protein, gltD family; Identified by match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992.	Glutamate synthase, small subunit; Identified by similarity to EGAD:142506; match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01317.	0.450
CT2247	CT0282	CT2247	CT0282	Iron-sulfur cluster-binding protein, gltD family; Identified by match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992.	Glutamate synthase, small subunit, putative; Identified by similarity to EGAD:37434; match to protein family HMM PF00070; match to protein family HMM PF07992.	0.487
CT2247	gltD-2	CT2247	CT0402	Iron-sulfur cluster-binding protein, gltD family; Identified by match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992.	Glutamate synthase, small subunit; Identified by similarity to EGAD:142506; match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01317.	0.450
gltD-1	CT0282	CT0473	CT0282	Glutamate synthase, small subunit; Identified by similarity to EGAD:37434; match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01316.	Glutamate synthase, small subunit, putative; Identified by similarity to EGAD:37434; match to protein family HMM PF00070; match to protein family HMM PF07992.	0.919
gltD-1	gltD-2	CT0473	CT0402	Glutamate synthase, small subunit; Identified by similarity to EGAD:37434; match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01316.	Glutamate synthase, small subunit; Identified by similarity to EGAD:142506; match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01317.	0.910
gltD-2	CT0282	CT0402	CT0282	Glutamate synthase, small subunit; Identified by similarity to EGAD:142506; match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01317.	Glutamate synthase, small subunit, putative; Identified by similarity to EGAD:37434; match to protein family HMM PF00070; match to protein family HMM PF07992.	0.925
gltD-2	CT0854	CT0402	CT0854	Glutamate synthase, small subunit; Identified by similarity to EGAD:142506; match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01317.	Iron-sulfur cluster-binding protein, gltD family; Identified by match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992.	0.450
gltD-2	CT2247	CT0402	CT2247	Glutamate synthase, small subunit; Identified by similarity to EGAD:142506; match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01317.	Iron-sulfur cluster-binding protein, gltD family; Identified by match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992.	0.450
gltD-2	gltD-1	CT0402	CT0473	Glutamate synthase, small subunit; Identified by similarity to EGAD:142506; match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01317.	Glutamate synthase, small subunit; Identified by similarity to EGAD:37434; match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01316.	0.910