STRINGSTRING
shc_3 shc_3 shc_4 shc_4 GCA_000715605_08568 GCA_000715605_08568 ent-cdps ent-cdps shc_1 shc_1 cyc2 cyc2 cyc1 cyc1 shc_2 shc_2 GCA_000715605_08005 GCA_000715605_08005
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
shc_3Squalene--hopene cyclase. (290 aa)
shc_4Squalene--hopene cyclase. (421 aa)
GCA_000715605_08568Hypothetical protein. (131 aa)
ent-cdpsEnt-copalyl diphosphate synthase. (293 aa)
shc_1Squalene--hopene cyclase. (566 aa)
cyc2Germacradienol/geosmin synthase. (718 aa)
cyc1Epi-isozizaene synthase. (337 aa)
shc_2Squalene--hopene cyclase. (561 aa)
GCA_000715605_08005Germacrene A synthase. (323 aa)
Your Current Organism:
Streptomyces speibonae
NCBI taxonomy Id: 195801
Other names: ATCC BAA-411, CIP 108060, DSM 41797, JCM 12682, KCTC 9973, NBRC 101001, NRRL B-24240, S. speibonae, Streptomyces speibonae Meyers et al. 2003, strain PK-Blue
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.