(25 nodes) Salmonella infection network (Microdochium bolleyi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A136J7B5	CAS/CSE protein. (957 aa)
	A0A136J9N3	Uncharacterized protein. (604 aa)
	A0A136JJ38	Cytochrome c; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain. (108 aa)
	A0A136JHM1	37S ribosomal protein mrp10, mitochondrial; Involved in mitochondrial genome encoded proteins translation. (98 aa)
	A0A136JJE3	APH domain-containing protein. (307 aa)
	A0A136JDV8	ELMO/CED-12 family protein. (751 aa)
	A0A136IIY7	Kinase-like domain-containing protein. (276 aa)
	A0A136ILT3	Cupredoxin. (246 aa)
	A0A136IM78	Cupredoxin. (161 aa)
	A0A136IPA0	Ceramide very long chain fatty acid hydroxylase; Ceramide hydroxylase involved in the hydroxylation of sphingolipid-associated very long chain fatty acids. Postulated to hydroxylate the very long chain fatty acid of dihydroceramides and phytoceramides at C-2; Belongs to the sterol desaturase family. SCS7 subfamily. (378 aa)
	A0A136IQN0	APH domain-containing protein. (572 aa)
	A0A136IWB1	Uncharacterized protein. (298 aa)
	A0A136IWL7	Uncharacterized protein. (99 aa)
	A0A136IXV5	Uncharacterized protein. (582 aa)
	A0A136J1Y6	Dynein light chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures. (102 aa)
	A0A136J4S0	HMG box domain-containing protein. (413 aa)
	A0A136J5B9	Exocyst complex component SEC5; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family. (1043 aa)
	A0A136J748	Sec8 exocyst complex component-specific domain-containing protein. (1112 aa)
	A0A136J789	Spindle pole body component. (802 aa)
	A0A136J7L3	Exocyst complex component Sec10-like protein. (914 aa)
	A0A136JDY0	Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations. (130 aa)
	A0A136JAJ8	Robl_LC7 domain-containing protein. (147 aa)
	A0A136JJ87	Uncharacterized protein. (421 aa)
	A0A136JD41	Tctex-1 family-domain-containing protein. (214 aa)
	A0A136JDU9	Exocyst complex component Sec10-like protein. (651 aa)

Your Current Organism:

Microdochium bolleyi

NCBI taxonomy Id: 196109
Other names: M. bolleyi

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A136J1Y6	A0A136JAJ8	Dynein light chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.	Robl_LC7 domain-containing protein.	0.976
A0A136J1Y6	A0A136JD41	Dynein light chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.	Tctex-1 family-domain-containing protein.	0.964
A0A136J5B9	A0A136J748	Exocyst complex component SEC5; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	Sec8 exocyst complex component-specific domain-containing protein.	0.999
A0A136J5B9	A0A136J7L3	Exocyst complex component SEC5; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	Exocyst complex component Sec10-like protein.	0.977
A0A136J5B9	A0A136JDU9	Exocyst complex component SEC5; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	Exocyst complex component Sec10-like protein.	0.999
A0A136J748	A0A136J5B9	Sec8 exocyst complex component-specific domain-containing protein.	Exocyst complex component SEC5; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	0.999
A0A136J748	A0A136J7L3	Sec8 exocyst complex component-specific domain-containing protein.	Exocyst complex component Sec10-like protein.	0.977
A0A136J748	A0A136JDU9	Sec8 exocyst complex component-specific domain-containing protein.	Exocyst complex component Sec10-like protein.	0.999
A0A136J7L3	A0A136J5B9	Exocyst complex component Sec10-like protein.	Exocyst complex component SEC5; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	0.977
A0A136J7L3	A0A136J748	Exocyst complex component Sec10-like protein.	Sec8 exocyst complex component-specific domain-containing protein.	0.977
A0A136JAJ8	A0A136J1Y6	Robl_LC7 domain-containing protein.	Dynein light chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.	0.976
A0A136JAJ8	A0A136JD41	Robl_LC7 domain-containing protein.	Tctex-1 family-domain-containing protein.	0.988
A0A136JD41	A0A136J1Y6	Tctex-1 family-domain-containing protein.	Dynein light chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in changing or maintaining the spatial distribution of cytoskeletal structures.	0.964
A0A136JD41	A0A136JAJ8	Tctex-1 family-domain-containing protein.	Robl_LC7 domain-containing protein.	0.988
A0A136JDU9	A0A136J5B9	Exocyst complex component Sec10-like protein.	Exocyst complex component SEC5; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	0.999
A0A136JDU9	A0A136J748	Exocyst complex component Sec10-like protein.	Sec8 exocyst complex component-specific domain-containing protein.	0.999
A0A136JDY0	A0A136JJ87	Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations.	Uncharacterized protein.	0.452
A0A136JJ87	A0A136JDY0	Uncharacterized protein.	Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations.	0.452