STRINGSTRING
yjjM yjjM pdhR pdhR ydfH ydfH ygaE ygaE glcC glcC c3750 c3750 exuR exuR yhcK yhcK lldR lldR c4616 c4616 yieP yieP uxuR uxuR
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
yjjMHypothetical protein yjjM; Escherichia coli K-12 ortholog: b4357; Escherichia coli O157:H7 ortholog: z5957. (301 aa)
pdhRPyruvate dehydrogenase complex repressor; Transcriptional repressor for the pyruvate dehydrogenase complex genes aceEF and lpd. (265 aa)
ydfHHypothetical transcriptional regulator ydfH; Escherichia coli K-12 ortholog: b1540; Escherichia coli O157:H7 ortholog: z2157. (228 aa)
ygaEHypothetical transcriptional regulator ygaE; Escherichia coli K-12 ortholog: b2664; Escherichia coli O157:H7 ortholog: z3963. (226 aa)
glcCGlc operon transcriptional activator; Transcriptional activator of the glcDEFGB operon which is associated with glycolate utilization, and encodes malate synthase G and the genes needed for glycolate oxidase activity. Also negatively regulates the transcription of its own gene. Glycolate acts as an effector, but GlcC can also use acetate as an alternative effector. (274 aa)
c3750Putative regulator; Residues 1 to 248 of 249 are 78.62 pct identical to residues 18 to 265 of 266 from GenPept.129 : >gb|AAL21959.1| (AE008842) putative regulatory protein, gntR family [Salmonella typhimurium LT2]. (249 aa)
exuRExu regulon transcriptional regulator; Escherichia coli K-12 ortholog: b3094; Escherichia coli O157:H7 ortholog: z4448. (263 aa)
yhcKHypothetical transcriptional regulator yhcK; Transcriptional repressor that controls expression of the genes required for the catabolism of sialic acids. (263 aa)
lldRPutative L-lactate dehydrogenase operon Regulatory protein; Escherichia coli K-12 ortholog: b3604; Escherichia coli O157:H7 ortholog: z5031. (263 aa)
c4616Hypothetical protein; Fusion of Escherichia coli K-12 B3694 and B3695; Residues 1 to 229 of 229 are 99.12 pct identical to residues 1 to 229 of 229 from SwissProt.40 : >sp|P31460|DGOR_ECOLI GALACTONATE OPERON TRANSCRIPTIONAL REPRESSOR. (229 aa)
yiePHypothetical transcriptional regulator yieP; Escherichia coli K-12 ortholog: b3755; Escherichia coli O157:H7 ortholog: z5258. (230 aa)
uxuRUxu operon transcriptional regulator; Escherichia coli K-12 ortholog: b4324; Escherichia coli O157:H7 ortholog: z5922. (257 aa)
Your Current Organism:
Escherichia coli CFT073
NCBI taxonomy Id: 199310
Other names: E. coli CFT073, Escherichia coli str. CFT073, Escherichia coli strain CFT073
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