STRINGSTRING
yliH yliH bolA bolA cspG cspG yceP yceP sdiA sdiA ygaG ygaG chuA chuA yjaA yjaA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
yliHHypothetical protein yliH; Escherichia coli K-12 ortholog: b0836; Escherichia coli O157:H7 ortholog: z1062. (138 aa)
bolABolA protein; Transcriptional regulator that plays an important role in general stress response. (116 aa)
cspGCold shock-like protein cspG; CSP-G; Escherichia coli K-12 ortholog: b0990; Escherichia coli O157:H7 ortholog: z1406. (70 aa)
ycePHypothetical protein yceP; Represses biofilm formation in M9C glu and LB glu media but not in M9C and LB media. Seems to act as a global regulator of several genes involved in catabolite repression and stress response and regulation of the uptake and export of signaling pathways. Could be involved the regulation of indole as well as uptake and export of AI-2 through a cAMP-dependent pathway (By similarity). (85 aa)
sdiARegulatory protein sdiA; Escherichia coli K-12 ortholog: b1916; Escherichia coli O157:H7 ortholog: z3004. (244 aa)
ygaGAutoinducer-2 production protein luxS; Involved in the synthesis of autoinducer 2 (AI-2) which is secreted by bacteria and is used to communicate both the cell density and the metabolic potential of the environment. The regulation of gene expression in response to changes in cell density is called quorum sensing. Catalyzes the transformation of S-ribosylhomocysteine (RHC) to homocysteine (HC) and 4,5-dihydroxy-2,3-pentadione (DPD). Belongs to the LuxS family. (171 aa)
chuAOuter membrane heme/hemoglobin receptor; Escherichia coli O157:H7 ortholog: z4911. (648 aa)
yjaAHypothetical protein yjaA; Escherichia coli K-12 ortholog: b4011. (139 aa)
Your Current Organism:
Escherichia coli CFT073
NCBI taxonomy Id: 199310
Other names: E. coli CFT073, Escherichia coli str. CFT073, Escherichia coli strain CFT073
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