STRINGSTRING
Sde_1101 Sde_1101 Sde_1102 Sde_1102 Sde_1103 Sde_1103 Sde_1104 Sde_1104 Sde_1105 Sde_1105 Sde_1261 Sde_1261 Sde_1262 Sde_1262 Sde_1263 Sde_1263 Sde_2828 Sde_2828 Sde_2829 Sde_2829 Sde_2830 Sde_2830 Sde_2831 Sde_2831
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Sde_1101TonB-dependent receptor. (1011 aa)
Sde_1102SapC. (235 aa)
Sde_1103Transcription factor jumonji/aspartyl beta-hydroxylase. (335 aa)
Sde_1104Tryptophan halogenase. (740 aa)
Sde_1105Tryptophan halogenase. (517 aa)
Sde_1261SapC. (257 aa)
Sde_1262Tryptophan halogenase. (524 aa)
Sde_1263TonB-dependent receptor. (920 aa)
Sde_2828Tryptophan halogenase. (498 aa)
Sde_2829Transcription factor jumonji/aspartyl beta-hydroxylase. (356 aa)
Sde_2830SapC. (242 aa)
Sde_2831TonB-dependent receptor, plug. (1017 aa)
Your Current Organism:
Saccharophagus degradans
NCBI taxonomy Id: 203122
Other names: Microbulbifer degradans 2-40, Microbulbifer sp. 2-40, S. degradans 2-40, Saccharophagus degradans 2-40, Saccharophagus degradans ATCC 43961, Saccharophagus degradans str. 2-40, Saccharophagus degradans strain 2-40, bacterium 2-40
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