STRINGSTRING
Psyr_0010 Psyr_0010 glyS glyS glyQ glyQ fmt fmt def def Psyr_0054 Psyr_0054 Psyr_0056 Psyr_0056 Psyr_0063 Psyr_0063 Psyr_0097 Psyr_0097 Psyr_0099 Psyr_0099 rimK rimK Psyr_0219 Psyr_0219 rpmB rpmB rpmG rpmG Psyr_0257 Psyr_0257 Psyr_0263 Psyr_0263 Psyr_0267 Psyr_0267 opgG opgG opgH opgH argS argS rpmE rpmE Psyr_0402 Psyr_0402 Psyr_0515 Psyr_0515 Psyr_0520 Psyr_0520 Psyr_0521 Psyr_0521 Psyr_0522 Psyr_0522 Psyr_0523 Psyr_0523 Psyr_0529 Psyr_0529 Psyr_0530 Psyr_0530 Psyr_0531 Psyr_0531 Psyr_0532 Psyr_0532 Psyr_0534 Psyr_0534 Psyr_0542 Psyr_0542 rpsF rpsF rpsR rpsR rplI rplI Psyr_0612 Psyr_0612 Psyr_0619 Psyr_0619 mpl mpl rplU rplU rpmA rpmA Psyr_0706 Psyr_0706 rpsT rpsT murJ murJ ileS ileS gluQ gluQ Psyr_0842 Psyr_0842 Psyr_0862 Psyr_0862 Psyr_0881 Psyr_0881 Psyr_0914 Psyr_0914 Psyr_0915 Psyr_0915 gmd gmd Psyr_0920 Psyr_0920 Psyr_0922 Psyr_0922 Psyr_0924 Psyr_0924 Psyr_0925 Psyr_0925 Psyr_0926 Psyr_0926 Psyr_0927 Psyr_0927 Psyr_0928 Psyr_0928 Psyr_0929 Psyr_0929 Psyr_0930 Psyr_0930 Psyr_0936 Psyr_0936 Psyr_0937 Psyr_0937 pth pth rplY rplY prfA prfA murI murI Psyr_1012 Psyr_1012 Psyr_1032 Psyr_1032 Psyr_1052 Psyr_1052 Psyr_1053 Psyr_1053 Psyr_1054 Psyr_1054 Psyr_1055 Psyr_1055 Psyr_1057 Psyr_1057 Psyr_1058 Psyr_1058 Psyr_1059 Psyr_1059 Psyr_1060 Psyr_1060 Psyr_1061 Psyr_1061 Psyr_1062 Psyr_1062 Psyr_1063 Psyr_1063 valS valS Psyr_1146 Psyr_1146 Psyr_1170 Psyr_1170 hisS hisS Psyr_1271 Psyr_1271 rpsP rpsP rplS rplS prfB prfB lysS lysS Psyr_1332 Psyr_1332 rpsB rpsB tsf tsf frr frr uppS uppS kdsA kdsA proS proS aspS aspS Psyr_1537 Psyr_1537 Psyr_1562 Psyr_1562 lpxL lpxL kdsB kdsB murB murB rpmF rpmF mltG mltG glnS glnS cysS cysS Psyr_1838 Psyr_1838 Psyr_1865 Psyr_1865 gltX gltX Psyr_2070 Psyr_2070 Psyr_2083 Psyr_2083 Psyr_2111 Psyr_2111 Psyr_2119 Psyr_2119 thrS thrS infC infC rpmI rpmI rplT rplT pheS pheS pheT pheT Psyr_2208 Psyr_2208 mrdA mrdA Psyr_2351 Psyr_2351 Psyr_2376 Psyr_2376 PbpG PbpG Psyr_2443 Psyr_2443 Psyr_2465 Psyr_2465 glgE glgE glgB glgB Psyr_2496 Psyr_2496 Psyr_2651 Psyr_2651 arnB arnB arnC arnC arnA arnA arnD arnD arnT arnT arnE arnE arnF arnF Psyr_2696 Psyr_2696 Psyr_2697 Psyr_2697 Psyr_2702 Psyr_2702 Psyr_2703 Psyr_2703 Psyr_2749 Psyr_2749 Psyr_2980 Psyr_2980 glgA glgA uppP uppP Psyr_3082 Psyr_3082 Psyr_3088 Psyr_3088 serS serS infA infA Psyr_3221 Psyr_3221 Psyr_3225 Psyr_3225 Psyr_3227 Psyr_3227 Psyr_3228 Psyr_3228 Psyr_3229 Psyr_3229 Psyr_3230 Psyr_3230 Psyr_3231 Psyr_3231 nagZ nagZ Psyr_3301 Psyr_3301 Psyr_3302 Psyr_3302 Psyr_3303 Psyr_3303 Psyr_3304 Psyr_3304 Psyr_3305 Psyr_3305 Psyr_3306 Psyr_3306 Psyr_3307 Psyr_3307 Psyr_3308 Psyr_3308 Psyr_3309 Psyr_3309 Psyr_3310 Psyr_3310 Psyr_3311 Psyr_3311 Psyr_3468 Psyr_3468 Psyr_3469 Psyr_3469 Psyr_3494 Psyr_3494 Psyr_3506 Psyr_3506 alaS alaS Psyr_3579 Psyr_3579 efp efp Psyr_3636 Psyr_3636 Psyr_3637 Psyr_3637 Psyr_3638 Psyr_3638 RpsA RpsA Psyr_3651 Psyr_3651 def-2 def-2 metG metG Psyr_3903 Psyr_3903 ddl ddl rpmE2 rpmE2 Psyr_3925 Psyr_3925 Psyr_3938 Psyr_3938 lepA lepA Psyr_3956 Psyr_3956 Psyr_3957 Psyr_3957 AlgU AlgU Psyr_3978 Psyr_3978 Psyr_4030 Psyr_4030 Psyr_4056 Psyr_4056 ddl-2 ddl-2 murC murC murG murG ftsW ftsW murD murD mraY mraY murF murF murE murE ftsI ftsI Psyr_4113 Psyr_4113 rpsI rpsI rplM rplM trpS trpS murA murA Psyr_4142 Psyr_4142 Psyr_4143 Psyr_4143 gatC gatC gatA gatA gatB gatB rpsO rpsO infB infB smpB smpB Psyr_4206 Psyr_4206 prfC prfC Psyr_4263 Psyr_4263 Psyr_4264 Psyr_4264 Psyr_4296 Psyr_4296 Psyr_4304 Psyr_4304 Psyr_4323 Psyr_4323 lnt lnt leuS leuS Psyr_4356 Psyr_4356 Psyr_4361 Psyr_4361 mrdB mrdB mrdA-2 mrdA-2 Psyr_4380 Psyr_4380 Psyr_4387 Psyr_4387 rplQ rplQ rpsD rpsD rpsK rpsK rpsM rpsM rplO rplO rpmD rpmD rpsE rpsE rplR rplR rplF rplF rpsH rpsH rpsN rpsN rplE rplE rplX rplX rplN rplN rpsQ rpsQ rpmC rpmC rplP rplP rpsC rpsC rplV rplV rpsS rpsS rplB rplB rplW rplW rplD rplD rplC rplC rpsJ rpsJ tuf tuf fusA fusA rpsG rpsG rpsL rpsL rplL rplL rplJ rplJ rplA rplA rplK rplK tyrS tyrS Psyr_4622 Psyr_4622 Psyr_4623 Psyr_4623 rpsU rpsU Psyr_4725 Psyr_4725 mtgA mtgA lgt lgt Psyr_4935 Psyr_4935 Psyr_4936 Psyr_4936 opgD opgD Psyr_5087 Psyr_5087 Psyr_5105 Psyr_5105 Psyr_5107 Psyr_5107 Psyr_5109 Psyr_5109 glmU glmU rpmH rpmH
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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Psyr_0010D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase. (180 aa)
glySglycyl-tRNA synthetase beta chain. (684 aa)
glyQglycyl-tRNA synthetase alpha chain. (335 aa)
fmtmethionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. (314 aa)
defPeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. (168 aa)
Psyr_0054Alginate regulatory protein AlgR3. (338 aa)
Psyr_0056Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ; Belongs to the Rsd/AlgQ family. (166 aa)
Psyr_0063Two-component response regulator AlgR. (248 aa)
Psyr_0097Hypothetical protein. (413 aa)
Psyr_0099Conserved hypothetical protein; Similar to BCE2369 and YPTB2343. (69 aa)
rimKSSU ribosomal protein S6P modification protein. (301 aa)
Psyr_0219Phosphomannomutase. (465 aa)
rpmBLSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family. (77 aa)
rpmGLSU ribosomal protein L33P; Belongs to the bacterial ribosomal protein bL33 family. (51 aa)
Psyr_0257RNA binding S1. (772 aa)
Psyr_0263Two-component response regulator AlgB. (448 aa)
Psyr_0267Endonuclease/exonuclease/phosphatase. (291 aa)
opgGPeriplasmic glucan biosynthesis protein, MdoG; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs). (642 aa)
opgHGlycosyl transferase, family 2; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs). (860 aa)
argSarginyl-tRNA synthetase. (579 aa)
rpmELSU ribosomal protein L31P; Binds the 23S rRNA. (73 aa)
Psyr_0402Peptidoglycan glycosyltransferase. (814 aa)
Psyr_0515HI0933-like protein. (392 aa)
Psyr_0520Glycosyl transferase, family 9. (344 aa)
Psyr_0521Glycosyl transferase, family 9. (354 aa)
Psyr_0522Glycosyl transferase, group 1. (373 aa)
Psyr_0523Lipopolysaccharide kinase; Catalyzes the phosphorylation of heptose(I) of the outer membrane lipopolysaccharide core; Belongs to the protein kinase superfamily. KdkA/rfaP family. (268 aa)
Psyr_0529Glycosyl transferase, group 1. (376 aa)
Psyr_0530Mig-14. (298 aa)
Psyr_0531LmbE-like protein. (469 aa)
Psyr_0532Conserved hypothetical protein. (318 aa)
Psyr_0534Membrane protein, putative. (389 aa)
Psyr_0542Three-deoxy-D-manno-octulosonic-acid transferase, N-terminal; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family. (381 aa)
rpsFSSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA. (141 aa)
rpsRSSU ribosomal protein S18P; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (76 aa)
rplILSU ribosomal protein L9P; Binds to the 23S rRNA. (148 aa)
Psyr_0612Nucleotidyl transferase. (253 aa)
Psyr_0619WavE lipopolysaccharide synthesis. (347 aa)
mplUDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase; Reutilizes the intact tripeptide L-alanyl-gamma-D-glutamyl- meso-diaminopimelate by linking it to UDP-N-acetylmuramate. Belongs to the MurCDEF family. Mpl subfamily. (449 aa)
rplULSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (103 aa)
rpmALSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family. (91 aa)
Psyr_0706Acyltransferase 3. (353 aa)
rpsTSSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA. (92 aa)
murJVirulence factor MVIN-like protein; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane. (528 aa)
ileSIsoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily. (943 aa)
gluQGlutamyl-tRNA synthetase, class Ic; Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5-dihydroxy-2- cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon; Belongs to the class-I aminoacyl-tRNA synthetase family. GluQ subfamily. (295 aa)
Psyr_0842Peptidoglycan glycosyltransferase; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits). (773 aa)
Psyr_0862Acyltransferase 3. (673 aa)
Psyr_0881Hypothetical protein. (92 aa)
Psyr_0914Glycosyl transferase, group 1. (370 aa)
Psyr_0915NAD-dependent epimerase/dehydratase. (298 aa)
gmdGDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose. (343 aa)
Psyr_0920Glycosyl transferase, group 1. (831 aa)
Psyr_0922Glycosyl transferase, family 2. (284 aa)
Psyr_0924Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family. (293 aa)
Psyr_0925dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family. (301 aa)
Psyr_0926dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily. (366 aa)
Psyr_0927Hypothetical protein. (297 aa)
Psyr_0928Hypothetical protein. (545 aa)
Psyr_0929Glycosyl transferase, family 2. (796 aa)
Psyr_0930Glycosyl transferase, family 2. (827 aa)
Psyr_0936Glycosyl transferase, group 1. (382 aa)
Psyr_0937Mannose-6-phosphate isomerase, type 2 / mannose-1-phosphate guanylyltransferase (GDP). (472 aa)
pthpeptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. (194 aa)
rplYLSU ribosomal protein L25P; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. (204 aa)
prfABacterial peptide chain release factor 1 (bRF-1); Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. (360 aa)
murIGlutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. (271 aa)
Psyr_1012Glycosyl transferase, group 1. (406 aa)
Psyr_1032UDP-N-Acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family. (416 aa)
Psyr_1052Mannose-6-phosphate isomerase, type 2 / mannose-1-phosphate guanylyltransferase (GDP). (483 aa)
Psyr_1053Alginate biosynthesis protein AlgF. (222 aa)
Psyr_1054Alginate biosynthesis protein AlgJ. (391 aa)
Psyr_1055Membrane bound O-acyl transferase, MBOAT; Belongs to the membrane-bound acyltransferase family. (518 aa)
Psyr_1057Alginate biosynthesis protein AlgX. (479 aa)
Psyr_1058Parallel beta-helix repeat:Carbohydrate binding and sugar hydrolysis. (536 aa)
Psyr_1059Alginate export porin; TC 1.B.13. (494 aa)
Psyr_1060Sel1-like repeat protein. (470 aa)
Psyr_1061Alginate biosynthesis protein Alg44. (390 aa)
Psyr_1062Alginate biosynthesis protein Alg8. (493 aa)
Psyr_1063GDP-mannose 6-dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. (438 aa)
valSvalyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. (948 aa)
Psyr_1146Glycosyl transferase, family 2. (294 aa)
Psyr_1170Amidase. (606 aa)
hisShistidyl-tRNA synthetase. (429 aa)
Psyr_1271ErfK/YbiS/YcfS/YnhG. (187 aa)
rpsPSSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family. (85 aa)
rplSLSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. (116 aa)
prfBBacterial peptide chain release factor 2 (bRF-2); Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. (329 aa)
lysSLysyl-tRNA synthetase, class-2; Belongs to the class-II aminoacyl-tRNA synthetase family. (500 aa)
Psyr_1332Glycosyl transferase, family 2. (831 aa)
rpsBSSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. (247 aa)
tsfTranslation elongation factor Ts (EF-Ts); Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. (287 aa)
frrRibosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. (185 aa)
uppSUndecaprenyl pyrophosphate synthetase; Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with (2E,6E)-farnesyl diphosphate (E,E-FPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30Z,34E,38E)-undecaprenyl diphosphate (di- trans,octa-cis-UPP). UPP is the precursor of glycosyl carrier lipid in the biosynthesis of bacterial cell wall polysaccharide components such as peptidoglycan and lipopolysaccharide. (251 aa)
kdsA2-dehydro-3-deoxyphosphooctonate aldolase; Belongs to the KdsA family. (281 aa)
proSProlyl-tRNA synthetase, bacterial; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and i [...] (571 aa)
aspSaspartate--tRNA(Asn) ligase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. (591 aa)
Psyr_1537Amidase; Belongs to the amidase family. (446 aa)
Psyr_1562phosphatidylethanolamine:Kdo2-lipid A phosphoethanolamine transferase. (558 aa)
lpxLLipid A biosynthesis acyltransferase; Catalyzes the transfer of laurate from lauroyl-acyl carrier protein (ACP) to Kdo(2)-lipid IV(A) to form Kdo(2)-(lauroyl)-lipid IV(A). (310 aa)
kdsB3-deoxy-D-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. (254 aa)
murBUDP-N-acetylmuramate dehydrogenase; Cell wall formation. (339 aa)
rpmFLSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family. (60 aa)
mltGProtein of unknown function DUF175; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. (371 aa)
glnSglutaminyl-tRNA synthetase. (564 aa)
cysScysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. (460 aa)
Psyr_1838Peptidase U61, LD-carboxypeptidase A. (311 aa)
Psyr_1865Sulfatase. (695 aa)
gltXglutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. (493 aa)
Psyr_2070ErfK/YbiS/YcfS/YnhG. (321 aa)
Psyr_2083Protein of unknown function DUF785. (178 aa)
Psyr_2111Peptidase S13, D-Ala-D-Ala carboxypeptidase C. (488 aa)
Psyr_2119Acyltransferase 3. (356 aa)
thrSSer-tRNA(Thr) hydrolase / threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). Also edits incorrectly charged L-seryl-tRNA(Thr). (640 aa)
infCBacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. (177 aa)
rpmILSU ribosomal protein L35P; Belongs to the bacterial ribosomal protein bL35 family. (64 aa)
rplTLSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (118 aa)
pheSphenylalanyl-tRNA synthetase, alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily. (338 aa)
pheTphenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. (792 aa)
Psyr_2208Amidase; Belongs to the amidase family. (511 aa)
mrdAPeptidoglycan glycosyltransferase / cell elongation-specific peptidoglycan D,D-transpeptidase; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily. (629 aa)
Psyr_2351tRNA synthetase, class-II (G, H, P and S). (193 aa)
Psyr_2376MltA-interacting MipA. (259 aa)
PbpGmurein-DD-endopeptidase, Serine peptidase, MEROPS family S11; Belongs to the peptidase S11 family. (294 aa)
Psyr_2443Conserved domain protein. (407 aa)
Psyr_2465Acyltransferase 3. (340 aa)
glgEAlpha amylase, catalytic region; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB. (672 aa)
glgBGlycogen branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily. (741 aa)
Psyr_2496Lipopolysaccharide core biosynthesis domain protein. (278 aa)
Psyr_2651Conserved hypothetical protein. (319 aa)
arnBDegT/DnrJ/EryC1/StrS aminotransferase; Catalyzes the conversion of UDP-4-keto-arabinose (UDP-Ara4O) to UDP-4-amino-4-deoxy-L-arabinose (UDP-L-Ara4N). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; Belongs to the DegT/DnrJ/EryC1 family. ArnB subfamily. (382 aa)
arnCGlycosyl transferase, family 2; Catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides. (337 aa)
arnAFormyl transferase, N-terminal:Formyl transferase, C-terminal; Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto- arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4- amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido- arabinose (UDP-L-Ara4FN). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; In the C-terminal section; belongs to the NAD(P)-dependent epimerase/dehydratase family. UDP-glucuronic acid decarboxylase subfamily. (664 aa)
arnDPolysaccharide deacetylase; Catalyzes the deformylation of 4-deoxy-4-formamido-L- arabinose-phosphoundecaprenol to 4-amino-4-deoxy-L-arabinose- phosphoundecaprenol. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; Belongs to the polysaccharide deacetylase family. ArnD deformylase subfamily. (293 aa)
arnTGlycosyl transferase, family 39; Catalyzes the transfer of the L-Ara4N moiety of the glycolipid undecaprenyl phosphate-alpha-L-Ara4N to lipid A. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides. Belongs to the glycosyltransferase 83 family. (550 aa)
arnEConserved hypothetical protein; Translocates 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol (alpha-L-Ara4N-phosphoundecaprenol) from the cytoplasmic to the periplasmic side of the inner membrane; Belongs to the ArnE family. (108 aa)
arnFConserved hypothetical protein; Translocates 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol (alpha-L-Ara4N-phosphoundecaprenol) from the cytoplasmic to the periplasmic side of the inner membrane; Belongs to the ArnF family. (144 aa)
Psyr_2696UDP-glucose 6-dehydrogenase. (464 aa)
Psyr_2697Glycosyl transferase, family 39. (493 aa)
Psyr_2702UDP-galactopyranose mutase. (393 aa)
Psyr_2703Conserved hypothetical protein. (394 aa)
Psyr_2749Methionine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. (499 aa)
Psyr_2980UDP-glucose pyrophosphorylase. (279 aa)
glgAStarch (bacterial glycogen) synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose. (532 aa)
uppPUndecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family. (276 aa)
Psyr_3082MltA-interacting MipA. (282 aa)
Psyr_3088Glycosyl transferase, group 1. (402 aa)
serSseryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec). (426 aa)
infABacterial translation initiation factor 1 (bIF-1); One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. (72 aa)
Psyr_3221DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family. (373 aa)
Psyr_3225Protein-tyrosine kinase. (735 aa)
Psyr_3227Glycosyl transferase, family 2. (333 aa)
Psyr_3228Glycosyl transferase, group 1. (401 aa)
Psyr_3229Glycosyl transferase, group 1. (371 aa)
Psyr_3230Glycosyl transferase, group 1. (409 aa)
Psyr_3231Sugar transferase. (469 aa)
nagZGlycoside hydrolase, family 3, N-terminal; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides. Belongs to the glycosyl hydrolase 3 family. NagZ subfamily. (336 aa)
Psyr_3301Undecaprenyl-phosphate galactosephosphotransferase. (478 aa)
Psyr_3302Mannose-6-phosphate isomerase, type 2 / mannose-1-phosphate guanylyltransferase (GDP). (485 aa)
Psyr_3303Polysaccharide export protein. (259 aa)
Psyr_3304Lipopolysaccharide biosynthesis. (663 aa)
Psyr_3305Glycosyl transferase, group 1. (392 aa)
Psyr_3306Glycoside hydrolase, family 5; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (437 aa)
Psyr_3307Glycosyl transferase, group 1. (405 aa)
Psyr_3308Glycosyl transferase, group 1. (366 aa)
Psyr_3309Membrane protein, putative. (471 aa)
Psyr_3310Transferase hexapeptide repeat protein. (273 aa)
Psyr_3311Virulence factor MVIN-like protein. (471 aa)
Psyr_3468Glycosyl transferase, family 2. (968 aa)
Psyr_3469Glycosyl transferase, family 2. (1190 aa)
Psyr_3494Hypothetical protein. (269 aa)
Psyr_3506Sulfatase. (677 aa)
alaSalanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. (899 aa)
Psyr_3579Class I peptide chain release factor. (137 aa)
efpTranslation elongation factor P (EF-P); Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. (189 aa)
Psyr_3636Polysaccharide biosynthesis protein CapD. (664 aa)
Psyr_3637Glycosyl transferase, family 4. (336 aa)
Psyr_3638UDP-glucose 4-epimerase, putative. (326 aa)
RpsASSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. (563 aa)
Psyr_3651N-acetyl-D-muramate 6-phosphate phosphatase; 2-phosphoglycolate phosphatase, prokaryotic:HAD-superfamily hydrolase, subfamily IA, variant 3:HAD-superfamily hydrolase, subfamily IA, variant 1. (223 aa)
def-2Formylmethionine deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. (179 aa)
metGmethionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. (682 aa)
Psyr_3903Conserved hypothetical protein 11; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily. (156 aa)
ddlD-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. (363 aa)
rpmE2LSU ribosomal protein L31P. (93 aa)
Psyr_3925Conserved hypothetical protein. (1045 aa)
Psyr_3938Amidase; Belongs to the amidase family. (457 aa)
lepAGTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner. (598 aa)
Psyr_3956Sigma E regulatory protein, MucB/RseB. (319 aa)
Psyr_3957Anti sigma-E protein, RseA. (196 aa)
AlgURNA polymerase, sigma-24 subunit, RpoE; Belongs to the sigma-70 factor family. ECF subfamily. (193 aa)
Psyr_3978Amidase. (604 aa)
Psyr_4030Ferredoxin:Oxidoreductase FAD/NAD(P)-binding protein. (312 aa)
Psyr_4056Dehydrogenase, putative. (330 aa)
ddl-2D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. (319 aa)
murCUDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. (486 aa)
murGUDPdiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. (356 aa)
ftsWCell division-specific peptidoglycan biosynthesis regulator FtsW; Peptidoglycan polymerase that is essential for cell division. Belongs to the SEDS family. FtsW subfamily. (404 aa)
murDUDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. (448 aa)
mraYPhospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. (360 aa)
murFUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. (456 aa)
murEUDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. (487 aa)
ftsIPeptidoglycan synthetase FtsI; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum. (576 aa)
Psyr_4113LppC putative lipoprotein. (604 aa)
rpsISSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family. (130 aa)
rplMLSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (142 aa)
trpStryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family. (449 aa)
murAUDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. (421 aa)
Psyr_4142KpsF/GutQ. (324 aa)
Psyr_4143HAD-superfamily hydrolase, subfamily IIIA:Phosphatase YrbI; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. (169 aa)
gatCaspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family. (95 aa)
gatAaspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). (483 aa)
gatBaspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily. (481 aa)
rpsOSSU ribosomal protein S15P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. (89 aa)
infBBacterial translation initiation factor 2 (bIF-2); One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. (841 aa)
smpBSsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] (160 aa)
Psyr_4206GGDEF domain protein. (361 aa)
prfCBacterial peptide chain release factor 3 (bRF-3); Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. (527 aa)
Psyr_4263Transcription elongation factor GreB. (165 aa)
Psyr_4264ABC transporter. (554 aa)
Psyr_4296HI0933-like protein. (424 aa)
Psyr_4304Endonuclease/exonuclease/phosphatase. (380 aa)
Psyr_4323Synthetase, putative. (263 aa)
lntApolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily. (506 aa)
leuSleucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. (868 aa)
Psyr_4356Conserved hypothetical protein. (51 aa)
Psyr_4361Penicillin-binding protein 6, Serine peptidase, MEROPS family S11; Belongs to the peptidase S11 family. (395 aa)
mrdBCell elongation-specific peptidoglycan biosynthesis regulator RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily. (381 aa)
mrdA-2Cell elongation-specific peptidoglycan D,D-transpeptidase / peptidoglycan glycosyltransferase; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily. (631 aa)
Psyr_4380Translation initiation factor 1 (eIF-1/SUI1). (123 aa)
Psyr_4387Glycosyl transferase, family 51:Penicillin-binding protein, transpeptidase:Penicillin-binding, C-terminal. (782 aa)
rplQLSU ribosomal protein L17P. (128 aa)
rpsDSSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (206 aa)
rpsKSSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (129 aa)
rpsMSSU ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. (118 aa)
rplOLSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (144 aa)
rpmDLSU ribosomal protein L30P. (58 aa)
rpsESSU ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. (166 aa)
rplRLSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (116 aa)
rplFLSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (177 aa)
rpsHSSU ribosomal protein S8P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (130 aa)
rpsNSSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. (101 aa)
rplELSU ribosomal protein L5P; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (179 aa)
rplXLSU ribosomal protein L24P; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. (104 aa)
rplNLSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa)
rpsQSSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (88 aa)
rpmCLSU ribosomal protein L29P; Belongs to the universal ribosomal protein uL29 family. (63 aa)
rplPLSU ribosomal protein L16P; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. (137 aa)
rpsCSSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (228 aa)
rplVLSU ribosomal protein L22P; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity). (110 aa)
rpsSSSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (91 aa)
rplBLSU ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (274 aa)
rplWLSU ribosomal protein L23P; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (99 aa)
rplDLSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. (200 aa)
rplCLSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. (211 aa)
rpsJSSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (124 aa)
tufTranslation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (397 aa)
fusATranslation elongation factor 2 (EF-2/EF-G); Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. [...] (701 aa)
rpsGSSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (156 aa)
rpsLSSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy. (123 aa)
rplLLSU ribosomal protein L12P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (121 aa)
rplJLSU ribosomal protein L10P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (166 aa)
rplALSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (231 aa)
rplKLSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. (143 aa)
tyrStyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily. (403 aa)
Psyr_4622Nucleotidyl transferase. (240 aa)
Psyr_4623Aminoglycoside phosphotransferase. (340 aa)
rpsUSSU ribosomal protein S21P; Belongs to the bacterial ribosomal protein bS21 family. (71 aa)
Psyr_4725Protein of unknown function DUF785. (167 aa)
mtgAGlycosyl transferase, family 51; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family. (236 aa)
lgtProlipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family. (270 aa)
Psyr_4935dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily. (360 aa)
Psyr_4936dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. (181 aa)
opgDTwin-arginine translocation pathway signal; Probably involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans (OPGs). Belongs to the OpgD/OpgG family. (539 aa)
Psyr_5087Acyltransferase 3. (627 aa)
Psyr_5105UDP-glucose 6-dehydrogenase. (449 aa)
Psyr_5107Glycosyl transferase, family 2. (247 aa)
Psyr_5109Glycosyl transferase, family 39. (509 aa)
glmUUDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N-acetyltransferase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain. In the C-terminal section; belongs to the t [...] (455 aa)
rpmHLSU ribosomal protein L34P; Belongs to the bacterial ribosomal protein bL34 family. (44 aa)
Your Current Organism:
Pseudomonas syringae B728a
NCBI taxonomy Id: 205918
Other names: P. syringae pv. syringae B728a, Pseudomonas syringae pv. syringae B728a, Pseudomonas syringae pv. syringae str. B728a, Pseudomonas syringae pv. syringae strain B728a
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