STRINGSTRING
Dde_0033 Dde_0033 Dde_0359 Dde_0359 Dde_0360 Dde_0360 Dde_0361 Dde_0361 Dde_0362 Dde_0362 Dde_0479 Dde_0479 Dde_0480 Dde_0480 Dde_0481 Dde_0481 Dde_0665 Dde_0665 Dde_1130 Dde_1130 Dde_1131 Dde_1131 Dde_1518 Dde_1518 Dde_2042 Dde_2042 Dde_2182 Dde_2182 Dde_2183 Dde_2183 Dde_2693 Dde_2693 Dde_2930 Dde_2930 Dde_3060 Dde_3060 Dde_3675 Dde_3675 Dde_3676 Dde_3676 Dde_3678 Dde_3678 Dde_3679 Dde_3679 Dde_3680 Dde_3680 Dde_3681 Dde_3681 Dde_3683 Dde_3683 Dde_3684 Dde_3684 Dde_3685 Dde_3685 Dde_3686 Dde_3686 Dde_3688 Dde_3688 Dde_3691 Dde_3691 Dde_3692 Dde_3692 Dde_3693 Dde_3693 Dde_3694 Dde_3694 Dde_3695 Dde_3695 Dde_3696 Dde_3696 Dde_3697 Dde_3697 Dde_3698 Dde_3698 Dde_3699 Dde_3699 Dde_3700 Dde_3700 Dde_3701 Dde_3701
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Dde_0033UDP-N-acetylglucosamine 4-epimerase; KEGG: dvm:DvMF_2048 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase. (335 aa)
Dde_0359TIGRFAM: Sialic acid O-acyltransferase, NeuD; KEGG: gur:Gura_4087 carbonic anhydrase. (213 aa)
Dde_0360PFAM: Polysaccharide biosynthesis protein CapD-like; KEGG: dsa:Desal_3620 polysaccharide biosynthesis protein CapD. (649 aa)
Dde_0361PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: dsa:Desal_3619 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family. (383 aa)
Dde_0362PFAM: Bacterial sugar transferase; Glycosyl transferase, group 1; KEGG: dsa:Desal_3614 glycosyl transferase group 1. (598 aa)
Dde_0479PFAM: Glycosyl transferase, group 1; KEGG: rce:RC1_2537 glycosyl transferase, group 1 family protein. (366 aa)
Dde_0480PFAM: O-antigen ligase-related; KEGG: dvm:DvMF_3018 O-antigen polymerase. (452 aa)
Dde_0481TIGRFAM: Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; Undecaprenyl-phosphate galactose phosphotransferase, WbaP; KEGG: cyn:Cyan7425_4214 undecaprenyl-phosphate galactose phosphotransferase, WbaP; PFAM: Bacterial sugar transferase. (466 aa)
Dde_0665Maltose O-acetyltransferase; KEGG: bae:BATR1942_16910 transferase hexapeptide repeat containing protein. (183 aa)
Dde_1130PFAM: Glycosyl transferase, family 2; KEGG: dvm:DvMF_2921 glycosyl transferase family 2. (256 aa)
Dde_1131KEGG: das:Daes_3071 glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family. (386 aa)
Dde_1518TIGRFAM: UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal type; KEGG: dvl:Dvul_1782 UTP-glucose-1-phosphate uridylyltransferase GalU; PFAM: Nucleotidyl transferase. (290 aa)
Dde_2042TIGRFAM: Nucleotide sugar dehydrogenase; KEGG: dvm:DvMF_0282 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation. (445 aa)
Dde_2182TIGRFAM: dTDP-glucose 4,6-dehydratase; KEGG: dvm:DvMF_0141 dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily. (340 aa)
Dde_2183dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family. (294 aa)
Dde_2693Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family. (291 aa)
Dde_2930dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. (185 aa)
Dde_3060UDP-glucuronate decarboxylase; KEGG: dvm:DvMF_1312 NAD-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase. (331 aa)
Dde_3675KEGG: sku:Sulku_2387 hypothetical protein. (608 aa)
Dde_3676Acetyltransferase; KEGG: sku:Sulku_2385 acetyltransferase. (208 aa)
Dde_3678PFAM: Glycosyl transferase, family 2; KEGG: npu:Npun_R1218 filamentous haemagglutinin outer membrane protein. (466 aa)
Dde_3679PFAM: Acylneuraminate cytidylyltransferase; KEGG: pcu:pc1566 hypothetical protein. (282 aa)
Dde_3680Hypothetical protein; KEGG: mja:MJ_1064 galactoside acetyltransferase LacA. (199 aa)
Dde_3681KEGG: mta:Moth_0756 N-acetylneuraminate synthase; PFAM: N-acetylneuraminic acid synthase, N-terminal; SAF domain. (344 aa)
Dde_3683Xenobiotic-transporting ATPase; PFAM: ABC transporter-like; KEGG: dba:Dbac_3273 ABC transporter related; SMART: ATPase, AAA+ type, core. (603 aa)
Dde_3684KEGG: dsa:Desal_3624 hypothetical protein. (176 aa)
Dde_3685PFAM: HpcH/HpaI aldolase; KEGG: dvl:Dvul_2640 2-dehydro-3-deoxyglucarate aldolase; Belongs to the HpcH/HpaI aldolase family. (258 aa)
Dde_3686PFAM: NAD-dependent epimerase/dehydratase; KEGG: dvl:Dvul_2641 NAD-dependent epimerase/dehydratase. (307 aa)
Dde_3688KEGG: dvl:Dvul_2643 hexapaptide repeat-containing transferase. (202 aa)
Dde_3691dTDP-glucose 4,6-dehydratase; KEGG: sku:Sulku_2396 nad-dependent epimerase/dehydratase; PFAM: NAD-dependent epimerase/dehydratase. (319 aa)
Dde_3692Hypothetical protein; KEGG: das:Daes_1161 phosphonate metabolim protein, transferase hexapeptide repeat family. (250 aa)
Dde_3693PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: dvu:DVU0336 aminotransferase; Belongs to the DegT/DnrJ/EryC1 family. (1156 aa)
Dde_3694TIGRFAM: Glucose-1-phosphate cytidylyltransferase; KEGG: dvl:Dvul_2889 glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase. (263 aa)
Dde_3695TIGRFAM: CDP-glucose 4,6-dehydratase; KEGG: dvl:Dvul_2888 CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase. (368 aa)
Dde_3696KEGG: dvm:DvMF_1910 polysaccharide biosynthesis domain-containing protein. (173 aa)
Dde_3697PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: dvm:DvMF_1911 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family. (384 aa)
Dde_3698PFAM: Glycosyl transferase, family 2; KEGG: dvu:DVU0076 glycosyl transferase group 2 family protein. (327 aa)
Dde_3699PFAM: Oligosaccharyl transferase, STT3 subunit; KEGG: dvm:DvMF_0846 hypothetical protein. (722 aa)
Dde_3700KEGG: vpe:Varpa_0123 hypothetical protein. (161 aa)
Dde_3701KEGG: dvm:DvMF_1888 DNA-3-methyladenine glycosylase I; PFAM: Methyladenine glycosylase. (197 aa)
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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