STRINGSTRING
AIS16053.1 AIS16053.1 AIS16785.1 AIS16785.1 AIS16786.1 AIS16786.1 AIS18378.1 AIS18378.1 AIS18589.1 AIS18589.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AIS16053.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (829 aa)
AIS16785.1Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method: Protein Homology. (211 aa)
AIS16786.1Biopolymer transporter ExbD; Derived by automated computational analysis using gene prediction method: Protein Homology. (142 aa)
AIS18378.1Zinc finger-domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (370 aa)
AIS18589.1Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology. (301 aa)
Your Current Organism:
Pseudomonas rhizosphaerae
NCBI taxonomy Id: 216142
Other names: CECT 5726, DSM 16299, LMG 21640, LMG:21640, P. rhizosphaerae, Pseudomonas rhizosphaerae Peix et al. 2003, strain IH5
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