STRINGSTRING
ECA3397 ECA3397 ECA3398 ECA3398 ECA3399 ECA3399 ECA3400 ECA3400 ECA3401 ECA3401 ECA3402 ECA3402
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ECA3397Putative exported protein; No significant database matches. (120 aa)
ECA3398Putative membrane protein; No significant database matches. (47 aa)
ECA3399Probable integrase/recombinase; Similar to Photorhabdus luminescens Int SWALL:AAN64203 (EMBL:AY144117) (465 aa) fasta scores: E(): 1.9e-79, 63.22% id in 329 aa, and to Ralstonia solanacearum probable integrase/recombinase protein rsp0090 or rs05531 SWALL:Q8XTL6 (EMBL:AL646076) (347 aa) fasta scores: E(): 4.1e-52, 48.28% id in 321 aa. Also similar to ECA3389 (93.824% id), ECA3406 (93.003% id), ECA3415 (93.003% id), ECA4283 (66.477% id), ECA4292 (66.477% id); Belongs to the 'phage' integrase family. (352 aa)
ECA3400DnaG primase-like protein; Similar to Photorhabdus luminescens DnaG primase-like DnaG SWALL:AAN64202 (EMBL:AY144117) (925 aa) fasta scores: E(): 5.1e-145, 74.15% id in 921 aa, and to the C-terminal region of Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri DNA primase DnaG or DnaP or ParB or b3066 or z4419 or ecs3949 or sf3107 SWALL:PRIM_ECOLI (SWALL:P02923) (581 aa) fasta scores: E(): 9.7e-14, 29.11% id in 395 aa. Also similar to ECA3390, (82.939% id), ECA3407 (86.812% id), ECA3416 (86.812% id), ECA4282 (84.394% id), and to ECA4291 (84.394% id). (963 aa)
ECA3401Putative phage regulatory protein; Similar to Photorhabdus luminescens Orf9 SWALL:AAN64201 (EMBL:AY144117) (130 aa) fasta scores: E(): 0.00051, 27.02% id in 111 aa, and to Bacteriophage A118 putative repressor protein SWALL:Q9T188 (EMBL:AJ242593) (101 aa) fasta scores: E(): 0.012, 36.5% id in 63 aa. (136 aa)
ECA3402Conserved hypothetical protein; Similar to Yersinia pestis hypothetical y0261 SWALL:Q8CLT6 (EMBL:AE013626) (74 aa) fasta scores: E(): 2.4e-17, 63.51% id in 74 aa, and to Photorhabdus luminescens Orf8 SWALL:Q8GDM5 (EMBL:AY144117) (106 aa) fasta scores: E(): 4.7e-10, 53.62% id in 69 aa. (74 aa)
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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