Your Input: | |
| | citB | Similar to Klebsiella pneumoniae transcriptional regulatory protein citb CITB SW:CITB_KLEPN (P52688) fasta scores: E(): 0, 84.6% id in 227 aa, and to Escherichia coli, and Shigella flexneri transcriptional regulatory protein dpia DPIA OR CITB OR MPDA OR CRIR SW:DPIA_ECOLI (Q54149) fasta scores: E(): 0, 47.3% id in 222 aa; Fasta hit to DCUR_ECOLI (239 aa), 30% identity in 225 aa overlap; Paralogue of E. coli criR (DPIA_ECOLI); Fasta hit to DPIA_ECOLI (226 aa), 47% identity in 222 aa overlap. (228 aa) |
| | oadA | Oxaloacetate decarboxylase alpha chain; Catalyzes the decarboxylation of oxaloacetate coupled to Na(+) translocation. (591 aa) |
| | STY0076 | Carbamoyl-phosphate synthase small chain; Orthologue of E. coli carA (CARA_ECOLI); Fasta hit to CARA_ECOLI (382 aa), 93% identity in 382 aa overlap; Belongs to the CarA family. (382 aa) |
| | STY0077 | Carbamoyl-phosphate synthase large chain; Orthologue of E. coli carB (CARB_ECOLI); Fasta hit to CARB_ECOLI (1072 aa), 98% identity in 1072 aa overlap. (1075 aa) |
| | STY0112 | DNA polymerase II; Orthologue of E. coli polB (DPO2_ECOLI); Fasta hit to DPO2_ECOLI (782 aa), 90% identity in 782 aa overlap. (783 aa) |
| | STY0129 | 3-isopropylmalate dehydratase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily. (201 aa) |
| | STY0130 | 3-isopropylmalate dehydratase; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. (466 aa) |
| | ilvI | Similar to Escherichia coli acetolactate synthase isozyme iii large subunit ILVI SW:ILVI_ECOLI (P00893; P78045) fasta scores: E(): 0, 92.2% id in 574 aa, and to Buchnera aphidicola acetolactate synthase large subunit ILVI SW:ILVI_BUCAP (O85293) fasta scores: E(): 0, 70.5% id in 572 aa. (574 aa) |
| | STY0136 | Acetolactate synthase isozyme III small subunit; Orthologue of E. coli ilvH (ILVH_ECOLI); Fasta hit to ILVH_ECOLI (163 aa), 96% identity in 163 aa overlap. (164 aa) |
| | STY0163 | GMP reductase; Catalyzes the irreversible NADPH-dependent deamination of GMP to IMP. It functions in the conversion of nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and in maintaining the intracellular balance of A and G nucleotides. (347 aa) |
| | STY0175 | Pyruvate dehydrogenase E1 component; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (887 aa) |
| | STY0176 | Dihydrolipoamide acetyltransferase component (E2) of pyruvate dehydrogenase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (629 aa) |
| | STY0177 | Dihydrolipoamide dehydrogenase; Orthologue of E. coli lpdA (DLDH_ECOLI); Fasta hit to DLDH_ECOLI (473 aa), 98% identity in 473 aa overlap. (475 aa) |
| | STY0208 | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridinepyrophosphokinase; Orthologue of E. coli folK (HPPK_ECOLI); Fasta hit to HPPK_ECOLI (158 aa), 82% identity in 158 aa overlap. (159 aa) |
| | STY0230 | Deoxyguanosinetriphosphate triphosphohydrolase; dGTPase preferentially hydrolyzes dGTP over the other canonical NTPs; Belongs to the dGTPase family. Type 1 subfamily. (505 aa) |
| | STY0254 | DNA polymerase III, alpha chain; Orthologue of E. coli dnaE (DP3A_ECOLI); Fasta hit to DP3A_ECOLI (1160 aa), 97% identity in 1160 aa overlap. (1160 aa) |
| | STY0255 | Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. (319 aa) |
| | STY0285 | DNA polymerase III epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contains the editing function and is a proofreading 3'- 5' exonuclease (By similarity). (243 aa) |
| | STY0320 | Hypothetical protein; No database matches. (148 aa) |
| | STY0356 | Conserved hypothetical protein; Orthologue of E. coli yafJ (YAFJ_ECOLI); Fasta hit to YAFJ_ECOLI (255 aa), 93% identity in 255 aa overlap. (255 aa) |
| | STY0358 | Hypothetical protein DinP (DNA damage-inducible protein); Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. (351 aa) |
| | STY0381 | Possible transcriptionl regulator; Similar to Salmonella typhimurium hypothetical 24.8 kDa protein TR:Q9RFV5 (EMBL:AF166275) (213 aa) fasta scores: E(): 0, 99.4% id in 175 aa, and to Klebsiella pneumoniae Rmpa2 rmpa2 TR:Q53343 (EMBL:S64176) (212 aa) fasta scores: E(): 1.7e-12, 31.9% id in 160 aa, and weakly to the C-terminus of Corynebacterium diphtheriae response regulator CstA cstA TR:Q9RPE7 (EMBL:AF161328) (233 aa) fasta scores: E(): 0.33, 34.3% id in 67 aa, and Salmonella typhimurium transcriptional regulatory protein UhpA uhpA SW:UHPA_SALTY (P27667) (196 aa) fasta scores: E(): 0.7 [...] (175 aa) |
| | STY0440 | Probable peroxidase; Similar to Legionella pneumophila predicted alkylhydrogenperoxide reductase tsaA TR:Q48834 (EMBL:L46863) (201 aa) fasta scores: E(): 0, 65.3% id in 199 aa, and to Campylobacter jejuni predicted alkyl hydroperoxide reductase subunit c ahpC TR:Q9ZI13 (EMBL:AF044271) (198 aa) fasta scores: E(): 0, 61.3% id in 199 aa, and to Homo sapiens thioredoxin peroxidase 1 tdpx1 or nkefB SW:TDX1_HUMAN (P32119; P35701; P31945; Q92763) (198 aa) fasta scores: E(): 0, 47.9% id in 194 aa; Paralogue of E. coli ahpC (AHPC_ECOLI); Fasta hit to AHPC_ECOLI (186 aa), 36% identity in 190 aa [...] (200 aa) |
| | STY0448 | Similar to predicted deoR-family regulators e.g. Streptomyces peucetius putative repressor dnrO TR:Q54822 (EMBL:L37338) (340 aa) fasta scores: E(): 5.1e-17, 33.2% id in 217 aa, and to Deinococcus radiodurans repressor protein, putative dr0055 TR:Q9RY95 (EMBL:AE001868) (316 aa) fasta scores: E(): 7.7e-16, 33.6% id in 223 aa. (230 aa) |
| | STY0456 | 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase beta chain); Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin; Belongs to the DMRL synthase family. (156 aa) |
| | STY0457 | N utilization substance protein B; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. (139 aa) |
| | STY0463 | Exodeoxyribonuclease small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (80 aa) |
| | phnX | Phosphonoacetaldehyde phosphonohydrolase; Involved in phosphonate degradation; Belongs to the HAD-like hydrolase superfamily. PhnX family. (269 aa) |
| | STY0482 | Cytochrome o ubiquinol oxidase C subunit; Orthologue of E. coli cyoD (CYOD_ECOLI); Fasta hit to CYOD_ECOLI (109 aa), 94% identity in 109 aa overlap. (109 aa) |
| | STY0483 | Cytochrome o ubiquinol oxidase subunit III; Orthologue of E. coli cyoC (CYOC_ECOLI); Fasta hit to CYOC_ECOLI (204 aa), 97% identity in 204 aa overlap. (204 aa) |
| | STY0491 | ATP-dependent clp protease ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. (423 aa) |
| | STY0501 | Putative lyase; Similar to Mycobacterium tuberculosis putative lyase rv3684 or mtv025.032 TR:O69652 (EMBL:AL022121) (346 aa) fasta scores: E(): 0, 61.5% id in 338 aa, and to Cyanidioschyzon merolae O-acetylserine cmoastl2 TR:Q9SSV8 (EMBL:AB031004) (390 aa) fasta scores: E(): 2.3e-16, 27.4% id in 329 aa, and to Emericella nidulans cysteine synthase cysB SW:CYSK_EMENI (P50867) (371 aa) fasta scores: E(): 1.7e-14, 25.6% id in 332 aa. (351 aa) |
| | STY0528 | DNA polymerase III subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (642 aa) |
| | gcl | Similar to Escherichia coli glyoxylate carboligase SW:GCL_ECOLI () (592 aa) fasta scores: E(): 0, 95.8% id in 592 aa, and to Corynebacterium glutamicum acetolactate synthase large subunit ilvB SW:ILVB_CORGL (P42463) (626 aa) fasta scores: E(): 0, 37.8% id in 561 aa; Belongs to the TPP enzyme family. (593 aa) |
| | fdrA | FdrA protein; Similar to Escherichia coli fdrA protein SW:FDRA_ECOLI (Q47208) (555 aa) fasta scores: E(): 0, 82.7% id in 555 aa, and to Escherichia coli hypothetical protein YahF SW:YAHF_ECOLI (P77187) (515 aa) fasta scores: E(): 0, 38.3% id in 512 aa, and to Bacillus subtilis succinyl-CoA synthetase alpha chain SucD SW:SUCD_BACSU (P80865) (299 aa) fasta scores: E(): 1.6e-05, 25.7% id in 183 aa; Fasta hit to YAHF_ECOLI (515 aa), 38% identity in 512 aa overlap; Orthologue of E. coli FDRA_ECOLI; Fasta hit to FDRA_ECOLI (555 aa), 83% identity in 555 aa overlap. (554 aa) |
| | STY0578 | Conserved hypothetical protein; Orthologue of E. coli YLBE_ECOLI; Fasta hit to YLBE_ECOLI (419 aa), 94% identity in 365 aa overlap. (415 aa) |
| | fimY | Fimbriae Y protein; Similar to Salmonella typhimurium fimbriae y protein fimY SW:FIMY_SALTY (P26318) (240 aa) fasta scores: E(): 0, 97.1% id in 240 aa. (240 aa) |
| | fimW | Fimbriae w protein; Similar to Salmonella typhimurium fimbriae w protein fimW SW:FIMW_SALTY (P37928) (198 aa) fasta scores: E(): 0, 98.5% id in 198 aa. (198 aa) |
| | STY0612 | Similar to Escherichia coli probable pyridine nucleotide-disulfide oxidoreductase in eaeh-beta intergenic region ykgC SW:YKGC_ECOLI (P77212) (450 aa) fasta scores: E(): 0, 74.4% id in 441 aa, and to Bacillus megaterium mercuric reductase merA TR:O69256 (EMBL:Y09907) (631 aa) fasta scores: E(): 0, 34.1% id in 452 aa, and to Bacillus sp mercuric reductase merA SW:MERA_BACSR (P16171) (631 aa) fasta scores: E(): 0, 33.2% id in 452 aa; Fasta hit to GSHR_ECOLI (450 aa), 30% identity in 454 aa overlap; Orthologue of E. coli ykgC (YKGC_ECOLI); Fasta hit to YKGC_ECOLI (450 aa), 74% identity in [...] (441 aa) |
| | STY0615 | Hypothetical protein; No database matches. (146 aa) |
| | STY0616 | Hypothetical protein; No database matches. (236 aa) |
| | STY0653 | Alkyl hydroperoxide reductase c22 protein; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides. (187 aa) |
| | STY0655 | Alkyl hydroperoxide reductase F52A protein (subunit F); Orthologue of E. coli ahpF (AHPF_ECOLI); Fasta hit to AHPF_ECOLI (521 aa), 95% identity in 521 aa overlap. (521 aa) |
| | STY0659 | Similar to Bacillus subtilis assimilatory nitrate reductase catalytic subunit nasc or narb or nasbB SW:NASC_BACSU (P42434) (710 aa) fasta scores: E(): 7.4e-33, 24.5% id in 702 aa, and to Salmonella typhimurium thiosulfate reductase precursor phsA SW:PHSA_SALTY (P37600) (758 aa) fasta scores: E(): 1.2e-29, 28.5% id in 743 aa; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (759 aa) |
| | STY0661 | Molybdopterin-containing oxidoreductase membrane anchor subunit; Similar to Escherichia coli anaerobic dimethyl sulfoxide reductase chain c dmsC SW:DMSC_ECOLI (P18777) (287 aa) fasta scores: E(): 4.5e-05, 27.0% id in 274 aa. (255 aa) |
| | dpiA | Transcriptional regulator CriR; Similar to Escherichia coli, and Shigella flexneri transcriptional regulatory protein dpia dpia or citb or mpda or criR SW:DPIA_ECOLI (Q54149) (226 aa) fasta scores: E(): 0, 85.1% id in 208 aa, and to Klebsiella pneumoniae transcriptional regulatory protein CitB citB SW:CITB_KLEPN (P52688) (234 aa) fasta scores: E(): 0, 48.5% id in 204 aa; Orthologue of E. coli criR (DPIA_ECOLI); Fasta hit to DPIA_ECOLI (226 aa), 85% identity in 208 aa overlap. (226 aa) |
| | STY0697 | DNA polymerase III, delta subunit; Orthologue of E. coli holA (HOLA_ECOLI); Fasta hit to HOLA_ECOLI (343 aa), 90% identity in 343 aa overlap. (343 aa) |
| | STY0756 | Probable DNA recombinase; Fasta hit to FIME_ECOLI (198 aa), 55% identity in 184 aa overlap; Paralogue of E. coli fimB (FIMB_ECOLI); Fasta hit to FIMB_ECOLI (200 aa), 60% identity in 185 aa overlap. (188 aa) |
| | STY0775 | Succinate dehydrogenase cytochrome b-556 subunit; Membrane-anchoring subunit of succinate dehydrogenase (SDH). (129 aa) |
| | STY0777 | Succinate dehydrogenase flavoprotein subunit; Fasta hit to NADB_ECOLI (540 aa), 32% identity in 570 aa overlap; Fasta hit to FRDA_ECOLI (601 aa), 43% identity in 597 aa overlap; Orthologue of E. coli sdhA (DHSA_ECOLI); Fasta hit to DHSA_ECOLI (588 aa), 98% identity in 588 aa overlap; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (588 aa) |
| | STY0779 | 2-oxoglutarate dehydrogenase E1 component; Orthologue of E. coli sucA (ODO1_ECOLI); Fasta hit to ODO1_ECOLI (933 aa), 95% identity in 933 aa overlap. (933 aa) |
| | STY0780 | Dihydrolipoamide succinyltransferase component (E2); E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). (402 aa) |
| | STY0781 | succinyl-CoA synthetase beta chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. (388 aa) |
| | STY0782 | succinyl-CoA synthetase alpha chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. (289 aa) |
| | STY0831 | Excision nuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissoc [...] (673 aa) |
| | STY0839 | Molybdopterin converting factor, subunit 1; Orthologue of E. coli moaD (MOAD_ECOLI); Fasta hit to MOAD_ECOLI (81 aa), 85% identity in 81 aa overlap. (83 aa) |
| | STY0840 | Molybdopterin converting factor, subunit 2; Converts molybdopterin precursor Z into molybdopterin. This requires the incorporation of two sulfur atoms into precursor Z to generate a dithiolene group. The sulfur is provided by MoaD (By similarity); Belongs to the MoaE family. (150 aa) |
| | STY0884 | Molybdopterin biosynthesis MoeB protein; Fasta hit to THIF_ECOLI (251 aa), 43% identity in 245 aa overlap; Orthologue of E. coli moeB (MOEB_ECOLI); Fasta hit to MOEB_ECOLI (249 aa), 89% identity in 249 aa overlap. (249 aa) |
| | STY0926 | Conserved hypothetical protein; Similar to Escherichia coli orfb TR:P75819 (EMBL:AE000188) (107 aa) fasta scores: E(): 0, 94.4% id in 107 aa, and to Bacillus anthracis pxo2-45 TR:Q9RMY7 (EMBL:AF188935) (103 aa) fasta scores: E(): 1.5e-18, 55.8% id in 104 aa, and to Listeria monocytogenes hypothetical 12.0 kDa protein in plcb-ldh intergenic region SW:YORB_LISMO (P33382) (110 aa) fasta scores: E(): 2.2e-17, 52.4% id in 103 aa; Orthologue of E. coli P75819; Fasta hit to P75819 (107 aa), 94% identity in 107 aa overlap; Belongs to the UPF0145 family. (107 aa) |
| | hcr | NADH oxidoreductase Hcr; Similar to Escherichia coli NADH oxidoreductase Hcr SW:HCR_ECOLI (P75824) (322 aa) fasta scores: E(): 0, 89.1% id in 322 aa, and to Escherichia coli putative dioxygenase beta subunit YeaX yeaX SW:YEAX_ECOLI (P76254) (321 aa) fasta scores: E(): 2e-15, 26.8% id in 325 aa, and to Pseudomonas putida phthalate 4,5-dioxygenase oxygenase reductase subunit pht2 SW:PHT2_PSEPU (Q05182) (324 aa) fasta scores: E(): 9.1e-15, 26.8% id in 291 aa; Orthologue of E. coli HCR_ECOLI; Fasta hit to HCR_ECOLI (322 aa), 89% identity in 322 aa overlap. (323 aa) |
| | STY0956 | Thioredoxin reductase; Orthologue of E. coli trxB (TRXB_ECOLI); Fasta hit to TRXB_ECOLI (320 aa), 97% identity in 319 aa overlap. (322 aa) |
| | STY0962 | Anaerobic dimethyl sulfoxide reductase chain A precursor; Fasta hit to P77783 (808 aa), 67% identity in 817 aa overlap; Fasta hit to TORA_ECOLI (848 aa), 32% identity in 862 aa overlap; Fasta hit to P77374 (808 aa), 69% identity in 804 aa overlap; Fasta hit to BISC_ECOLI (777 aa), 33% identity in 752 aa overlap; Fasta hit to BISZ_ECOLI (809 aa), 31% identity in 843 aa overlap; Orthologue of E. coli dmsA (DMSA_ECOLI); Fasta hit to DMSA_ECOLI (785 aa), 93% identity in 784 aa overlap; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (814 aa) |
| | STY0963 | Anaerobic dimethyl sulfoxide reductase chain B; Fasta hit to P77313 (205 aa), 93% identity in 205 aa overlap; Fasta hit to HYFA_ECOLI (205 aa), 30% identity in 188 aa overlap; Fasta hit to NRFC_ECOLI (223 aa), 35% identity in 188 aa overlap; Fasta hit to HYDN_ECOLI (175 aa), 38% identity in 167 aa overlap; Fasta hit to YSAA_ECOLI (157 aa), 34% identity in 164 aa overlap; Orthologue of E. coli dmsB (DMSB_ECOLI); Fasta hit to DMSB_ECOLI (204 aa), 97% identity in 204 aa overlap. (205 aa) |
| | STY0964 | Anaerobic dimethyl sulfoxide reductase chain C; Fasta hit to P76173 (284 aa), 58% identity in 286 aa overlap; Orthologue of E. coli dmsC (DMSC_ECOLI); Fasta hit to DMSC_ECOLI (287 aa), 90% identity in 287 aa overlap. (287 aa) |
| | STY0976 | Putative membrane protein; Orthologue of E. coli YCAP_ECOLI; Fasta hit to YCAP_ECOLI (230 aa), 86% identity in 229 aa overlap. (230 aa) |
| | STY1240 | DNA polymerase III, delta' subunit; Orthologue of E. coli holB (HOLB_ECOLI); Fasta hit to HOLB_ECOLI (334 aa), 79% identity in 334 aa overlap. (334 aa) |
| | STY1251 | NADH dehydrogenase; Orthologue of E. coli ndh (DHNA_ECOLI); Fasta hit to DHNA_ECOLI (433 aa), 98% identity in 433 aa overlap. (434 aa) |
| | STY1288 | Respiratory nitrate reductase 1 alpha chain; Fasta hit to NARZ_ECOLI (1245 aa), 79% identity in 1247 aa overlap; Orthologue of E. coli narG (NARG_ECOLI); Fasta hit to NARG_ECOLI (1246 aa), 95% identity in 1246 aa overlap; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (1247 aa) |
| | STY1289 | Respiratory nitrate reductase 1 beta chain; Fasta hit to NARY_ECOLI (514 aa), 81% identity in 505 aa overlap; Orthologue of E. coli narH (NARH_ECOLI); Fasta hit to NARH_ECOLI (512 aa), 93% identity in 511 aa overlap. (511 aa) |
| | STY1327 | Anthranilate synthase component II; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA). (531 aa) |
| | STY1328 | Anthranilate synthase component I; Orthologue of E. coli trpE (TRPE_ECOLI); Fasta hit to TRPE_ECOLI (520 aa), 90% identity in 520 aa overlap. (520 aa) |
| | STY1352 | Enoyl-[acyl-carrier-protein] reductase (NADH); Orthologue of E. coli fabI (FABI_ECOLI); Fasta hit to FABI_ECOLI (261 aa), 98% identity in 261 aa overlap. (262 aa) |
| | STY1419 | Similar to Escherichia coli probable pyruvate-flavodoxin oxidoreductase ydbK SW:NIFJ_ECOLI (P52647; P77238) (1174 aa) fasta scores: E(): 0, 92.9% id in 1174 aa; Orthologue of E. coli NIFJ_ECOLI; Fasta hit to NIFJ_ECOLI (1174 aa), 93% identity in 1174 aa overlap. (1174 aa) |
| | STY1487 | Respiratory nitrate reductase 2 beta chain; Fasta hit to NARH_ECOLI (512 aa), 80% identity in 506 aa overlap; Orthologue of E. coli narY (NARY_ECOLI); Fasta hit to NARY_ECOLI (514 aa), 95% identity in 514 aa overlap. (514 aa) |
| | STY1488 | Respiratory nitrate reductase 2 alpha chain; Fasta hit to NARG_ECOLI (1246 aa), 79% identity in 1247 aa overlap; Orthologue of E. coli narZ (NARZ_ECOLI); Fasta hit to NARZ_ECOLI (1245 aa), 90% identity in 1245 aa overlap; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (1242 aa) |
| | STY1503 | Putative hydrolase; Similar to Deinococcus radiodurans maltooligosyltrehalose trehalohydrolase, putative dr0464 TR:Q9RX51 (EMBL:AE001905) (600 aa) fasta scores: E(): 0, 43.4% id in 509 aa, and to Rhizobium sp maltooligosyl trehalose trehalohydrolase treZ TR:Q53238 (EMBL:D78001) (596 aa) fasta scores: E(): 0, 39.4% id in 569 aa. (594 aa) |
| | STY1523 | Uptake hydrogenase small subunit; Fasta hit to MBHT_ECOLI (372 aa), 40% identity in 366 aa overlap; Orthologue of E. coli hyaA (MBHS_ECOLI); Fasta hit to MBHS_ECOLI (372 aa), 73% identity in 360 aa overlap. (367 aa) |
| | hyaC2 | Similar to Escherichia coli probable ni/fe-hydrogenase 1 b-type cytochrome subunit hyaC SW:CYBH_ECOLI (P19929) (235 aa) fasta scores: E(): 0, 54.4% id in 226 aa. (242 aa) |
| | STY1561 | Spermidine N1-acetyltransferase; Orthologue of E. coli speG (ATDA_ECOLI); Fasta hit to ATDA_ECOLI (185 aa), 91% identity in 184 aa overlap. (186 aa) |
| | STY1565 | Putative dimethyl sulphoxide reductase subunit; Fasta hit to DMSA_ECOLI (785 aa), 68% identity in 791 aa overlap; Fasta hit to P77783 (808 aa), 71% identity in 805 aa overlap; Fasta hit to TORA_ECOLI (848 aa), 31% identity in 867 aa overlap; Fasta hit to BISC_ECOLI (777 aa), 31% identity in 779 aa overlap; Orthologue of E. coli P77374; Fasta hit to P77374 (808 aa), 87% identity in 812 aa overlap; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (812 aa) |
| | STY1567 | Similar to Yersinia pestis dimethyl sulfoxide reductase subunit b dmsB TR:Q9X6B5 (EMBL:AF135170) (205 aa) fasta scores: E(): 0, 85.9% id in 205 aa; Fasta hit to P77313 (205 aa), 92% identity in 205 aa overlap; Fasta hit to HYFA_ECOLI (205 aa), 30% identity in 188 aa overlap; Fasta hit to NRFC_ECOLI (223 aa), 35% identity in 188 aa overlap; Fasta hit to HYDN_ECOLI (175 aa), 38% identity in 167 aa overlap; Fasta hit to YSAA_ECOLI (157 aa), 34% identity in 164 aa overlap; Paralogue of E. coli dmsB (DMSB_ECOLI); Fasta hit to DMSB_ECOLI (204 aa), 96% identity in 204 aa overlap. (205 aa) |
| | STY1568 | Putative dimethyl sulphoxide reductase subunit; Fasta hit to DMSC_ECOLI (287 aa), 59% identity in 288 aa overlap; Orthologue of E. coli P76173; Fasta hit to P76173 (284 aa), 76% identity in 284 aa overlap. (284 aa) |
| | STY1744 | Pyruvate kinase; Fasta hit to KPY2_ECOLI (479 aa), 38% identity in 480 aa overlap; Orthologue of E. coli pykF (KPY1_ECOLI); Fasta hit to KPY1_ECOLI (470 aa), 96% identity in 470 aa overlap. (470 aa) |
| | STY1754 | Conserved hypothetical protein; Similar to Azotobacter vinelandii IscA iscA TR:O31271 (EMBL:AF010139) (107 aa) fasta scores: E(): 2.4e-17, 48.1% id in 106 aa; Fasta hit to YADR_ECOLI (114 aa), 33% identity in 107 aa overlap; Fasta hit to YFHF_ECOLI (107 aa), 47% identity in 105 aa overlap; Orthologue of E. coli YDIC_ECOLI; Fasta hit to YDIC_ECOLI (122 aa), 86% identity in 122 aa overlap; Belongs to the HesB/IscA family. (122 aa) |
| | STY1772 | phenylalanyl-tRNA synthetase beta chain; Orthologue of E. coli pheT (SYFB_ECOLI); Fasta hit to SYFB_ECOLI (795 aa), 92% identity in 795 aa overlap; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. (795 aa) |
| | STY1773 | phenylalanyl-tRNA synthetase alpha chain; Orthologue of E. coli pheS (SYFA_ECOLI); Fasta hit to SYFA_ECOLI (327 aa), 98% identity in 327 aa overlap; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily. (327 aa) |
| | STY1804 | Conserved hypothetical protein; Incises the DNA at the 3' side of a lesion during nucleotide excision repair. Incises the DNA farther away from the lesion than UvrC. Not able to incise the 5' site of a lesion. When a lesion remains because UvrC is not able to induce the 3' incision, Cho incises the DNA. Then UvrC makes the 5' incision. The combined action of Cho and UvrC broadens the substrate range of nucleotide excision repair (By similarity). (302 aa) |
| | STY1856 | Putative regulatory protein; Similar to Salmonella cholerae-suis hypothetical 21.3 kDa protein in aada 3'region TR:Q02882 (EMBL:X68089) (186 aa) fasta scores: E(): 0, 99.4% id in 175 aa. (197 aa) |
| | STY1863 | Similar to Salmonella typhimurium putative transmembrane protein oxd-6C TR:O34158 (EMBL:U94729) (270 aa) fasta scores: E(): 0, 100.0% id in 270 aa, and to Streptococcus pyogenes transmembrane transport protein DppC dppC TR:Q9ZAS4 (EMBL:U78968) (274 aa) fasta scores: E(): 0, 37.6% id in 258 aa. (270 aa) |
| | STY1906 | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. (315 aa) |
| | STY1915 | Probable Ni/Fe-hydrogenase 1 b-type cytochrome subunit; Orthologue of E. coli hyaC (CYBH_ECOLI); Fasta hit to CYBH_ECOLI (235 aa), 83% identity in 230 aa overlap. (243 aa) |
| | STY1993 | Hypothetical protein; No significant database matches. (88 aa) |
| | STY2082 | DNA polymerase III, theta subunit; Orthologue of E. coli holE (HOLE_ECOLI); Fasta hit to HOLE_ECOLI (76 aa), 88% identity in 76 aa overlap. (76 aa) |
| | STY2084 | Orthologue of E. coli EXOX_ECOLI; Fasta hit to EXOX_ECOLI (220 aa), 91% identity in 219 aa overlap. (232 aa) |
| | STY2096 | Pyruvate kinase A; Fasta hit to KPY1_ECOLI (470 aa), 37% identity in 480 aa overlap; Orthologue of E. coli pykA (KPY2_ECOLI); Fasta hit to KPY2_ECOLI (479 aa), 98% identity in 479 aa overlap; Belongs to the pyruvate kinase family. (480 aa) |
| | STY2102 | Holliday junction DNA helicase; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (336 aa) |
| | ruvA | Holliday junction DNA helicase; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (203 aa) |
| | STY2106 | Crossover junction endodeoxyribonuclease; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. (173 aa) |
| | STY2154 | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. (610 aa) |
| | fliA | RNA polymerase sigma transcription factor for flagellar operon; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily. (239 aa) |
| | STY2174 | Conserved hypothetical protein; Fasta hit to YHHP_ECOLI (81 aa), 31% identity in 72 aa overlap; Orthologue of E. coli yedF (YEDF_ECOLI); Fasta hit to YEDF_ECOLI (77 aa), 100% identity in 77 aa overlap; Belongs to the sulfur carrier protein TusA family. (77 aa) |
| | STY2190 | Colanic acid capsullar biosynthesis activation protein A; Component of the Rcs signaling system, which controls transcription of numerous genes. Binds, with RcsB, to the RcsAB box to regulate expression of genes. (207 aa) |
| | STY2205 | UmuC protein; Similar to Salmonella typhimurium UmuC protein umuC SW:UMUC_SALTY (P22494) (422 aa) fasta scores: E(): 0, 98.8% id in 422 aa; Orthologue of E. coli umuC (UMUC_ECOLI); Fasta hit to UMUC_ECOLI (422 aa), 83% identity in 422 aa overlap; Belongs to the DNA polymerase type-Y family. (422 aa) |
| | STY2206 | UmuD protein; Similar to Salmonella typhimurium UmuD protein umuD SW:UMUD_SALTY (P22493) (139 aa) fasta scores: E(): 0, 99.3% id in 139 aa; Orthologue of E. coli umuD (UMUD_ECOLI); Fasta hit to UMUD_ECOLI (139 aa), 73% identity in 138 aa overlap; Belongs to the peptidase S24 family. (139 aa) |
| | cbiP | Putative cobyric acid synthase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. (506 aa) |
| | cbiT | precorrin-8W decarboxylase; Catalyzes the methylation of C-15 in cobalt-precorrin-6B followed by the decarboxylation of C-12 to form cobalt-precorrin-7. (192 aa) |
| | cbiE | precorrin-6Y C5,15-methyltransferase [decarboxylating]; Catalyzes the methylation of C-5 in cobalt-precorrin-7 to form cobalt-precorrin-8. (201 aa) |
| | STY2284 | Amidotransferase; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF (By similarity). (196 aa) |
| | STY2416 | Putative oxidoreductase; Involved in pyrimidine base degradation. Catalyzes physiologically the reduction of uracil to 5,6-dihydrouracil (DHU) by using NADH as a specific cosubstrate. It also catalyzes the reverse reaction and the reduction of thymine to 5,6-dihydrothymine (DHT) (By similarity). (413 aa) |
| | STY2460 | Putative helicase; Orthologue of E. coli yejH (YEJH_ECOLI); Fasta hit to YEJH_ECOLI (586 aa), 95% identity in 586 aa overlap. (586 aa) |
| | STY2506 | Ribonucleoside-diphosphate reductase 1 alpha chain; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. (761 aa) |
| | STY2507 | Similar to Salmonella typhimurium ribonucleoside-diphosphate reductase 1 beta chain nrdB SW:RIR2_SALTY (P37427) (375 aa) fasta scores: E(): 0, 99.7% id in 375 aa; Orthologue of E. coli nrdB (RIR2_ECOLI); Fasta hit to RIR2_ECOLI (375 aa), 98% identity in 375 aa overlap. (376 aa) |
| | STY2513 | Anaerobic glycerol-3-phosphate dehydrogenase subunit A; Orthologue of E. coli glpA (GLPA_ECOLI); Fasta hit to GLPA_ECOLI (542 aa), 93% identity in 542 aa overlap; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family. (542 aa) |
| | STY2514 | Anaerobic glycerol-3-phosphate dehydrogenase subunit B; Conversion of glycerol 3-phosphate to dihydroxyacetone. Uses fumarate or nitrate as electron acceptor; Belongs to the anaerobic G-3-P dehydrogenase subunit B family. (419 aa) |
| | STY2546 | NADH dehydrogenase I chain N; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family. (425 aa) |
| | STY2547 | NADH dehydrogenase I chain M; Orthologue of E. coli nuoM (NUOM_ECOLI); Fasta hit to NUOM_ECOLI (509 aa), 96% identity in 509 aa overlap. (509 aa) |
| | STY2548 | NADH dehydrogenase I chain L; Fasta hit to HYFD_ECOLI (479 aa), 33% identity in 494 aa overlap; Orthologue of E. coli nuoL (NUOL_ECOLI); Fasta hit to NUOL_ECOLI (613 aa), 95% identity in 613 aa overlap. (613 aa) |
| | nuoK | NADH dehydrogenase I chain k; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family. (100 aa) |
| | STY2550 | NADH dehydrogenase I chain J; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (184 aa) |
| | nuoI | NADH dehydrogenase I chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (180 aa) |
| | STY2552 | NADH dehydrogenase I chain H; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone. (325 aa) |
| | nuoG | NADH dehydrogenase I chain G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient (By similarity). (910 aa) |
| | STY2554 | NADH dehydrogenase I chain F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family. (445 aa) |
| | STY2555 | NADH dehydrogenase I chain E; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient (By similarity); Belongs to the complex I 24 kDa subunit family. (166 aa) |
| | STY2556 | NADH dehydrogenase I chain C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family. (600 aa) |
| | STY2557 | NADH dehydrogenase I chain B; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (220 aa) |
| | STY2558 | NADH dehydrogenase I chain A; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family. (147 aa) |
| | STY2564 | Putative phosphatase; Similar to e.g. Saccharomyces cerevisiae GPP1 or RHR2 or YIL053W SW:GPP1_YEAST (P41277) (249 aa) fasta scores: E(): 3.9e-15, 34.2% id in 199 aa; Fasta hit to GPH_ECOLI (252 aa), 31% identity in 203 aa overlap; Orthologue of E. coli YFBT_ECOLI; Fasta hit to YFBT_ECOLI (222 aa), 87% identity in 221 aa overlap. (225 aa) |
| | STY2597 | acetyl-CoA carboxylase beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. (304 aa) |
| | STY2648 | Conserved hypothetical protein; Fasta hit to YAAX_ECOLI (98 aa), 49% identity in 105 aa overlap; Orthologue of E. coli YPEC_ECOLI; Fasta hit to YPEC_ECOLI (108 aa), 92% identity in 108 aa overlap. (108 aa) |
| | STY2666 | Cysteine synthase A; Two cysteine synthase enzymes are found. Both catalyze the same reaction. Cysteine synthase B can also use thiosulfate in place of sulfide to give cysteine thiosulfonate as a product (By similarity). (323 aa) |
| | STY2677 | Cysteine synthase B; Similar to Salmonella typhimurium LT2 cysteine synthase B cysM SW:CYSM_SALTY (P29848) (303 aa) fasta scores: E(): 0, 98.7% id in 303 aa; Fasta hit to CYSK_ECOLI (322 aa), 44% identity in 307 aa overlap; Orthologue of E. coli cysM (CYSM_ECOLI); Fasta hit to CYSM_ECOLI (303 aa), 93% identity in 303 aa overlap; Belongs to the cysteine synthase/cystathionine beta- synthase family. (303 aa) |
| | eutC | Similar to Salmonella typhimurium ethanolamine ammonia-lyase light chain eutC SW:EUTC_SALTY (P19265) (298 aa) fasta scores: E(): 0, 99.3% id in 298 aa; Orthologue of E. coli eutC (EUTC_ECOLI); Fasta hit to EUTC_ECOLI (295 aa), 91% identity in 298 aa overlap; Belongs to the EutC family. (298 aa) |
| | eutB | Similar to Salmonella typhimurium ethanolamine ammonia-lyase heavy chain SW:EUTB_SALTY (P19264) (453 aa) fasta scores: E(): 0, 99.8% id in 453 aa; Orthologue of E. coli eutB (EUTB_ECOLI); Fasta hit to EUTB_ECOLI (453 aa), 98% identity in 453 aa overlap. (453 aa) |
| | STY2742 | Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP); Belongs to the polyphosphate kinase 1 (PPK1) family. (688 aa) |
| | STY2753 | Exodeoxyribonuclease large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (449 aa) |
| | STY2763a | Similar to Escherichia coli hypothetical protein yfgJ SW:YFGJ_ECOLI (P76575) (83 aa) fasta scores: E(): 8.9e-19, 63.4% id in 71 aa and Vibrio cholerae hypothetical protein VC0765 TR:Q9KTW5 (EMBL:AE004162) (77 aa) fasta scores: E(): 1.4e-08, 40.6% id in 69 aa. (73 aa) |
| | STY2773 | Similar to Haemophilus influenzae anaerobic dimethyl sulfoxide reductase chain C dmsC or HI1045 SW:DMSC_HAEIN (P45002) (279 aa) fasta scores: E(): 1.5e-08, 25.4% id in 283 aa; Paralogue of E. coli dmsC (DMSC_ECOLI); Fasta hit to DMSC_ECOLI (287 aa), 33% identity in 285 aa overlap. Contains hydrophobic, probable membrane-spanning regions. (269 aa) |
| | STY2774 | Similar to Haemophilus influenzae anaerobic dimethyl sulfoxide reductase chain B dmsB or HI1046 SW:DMSB_HAEIN (P45003) (205 aa) fasta scores: E(): 0, 51.8% id in 193 aa; Fasta hit to P77313 (205 aa), 55% identity in 192 aa overlap; Paralogue of E. coli dmsB (DMSB_ECOLI); Fasta hit to DMSB_ECOLI (204 aa), 56% identity in 192 aa overlap. (209 aa) |
| | STY2785 | Chaperone protein HscA; Chaperone involved in the maturation of iron-sulfur cluster- containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB. Involved in the maturation of IscU. (616 aa) |
| | STY2786 | Chaperone protein HscB; Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA; Belongs to the HscB family. (171 aa) |
| | STY2787 | Conserved hypothetical protein; Is able to transfer iron-sulfur clusters to apo-ferredoxin. Multiple cycles of [2Fe2S] cluster formation and transfer are observed, suggesting that IscA acts catalytically. Recruits intracellular free iron so as to provide iron for the assembly of transient iron-sulfur cluster in IscU in the presence of IscS, L-cysteine and the thioredoxin reductase system TrxA/TrxB. (107 aa) |
| | nifU | NifU-like protein; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters. (128 aa) |
| | STY2789 | Putative L-cysteine desulfurase; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur and selenium atoms from cysteine and selenocysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins. Also functions as a selenium delivery protein in the pathway for the biosynthesis of selenophosphate; Belongs to the class-V pyridoxal-phosphate-dependent am [...] (404 aa) |
| | STY2822 | Putative ferredoxin; Similar to many e.g. Chromatium vinosum ferredoxin fdx SW:FER_CHRVI (P00208) (82 aa) fasta scores: E(): 3.6e-17, 60.5% id in 76 aa; Orthologue of E. coli YFHL_ECOLI; Fasta hit to YFHL_ECOLI (86 aa), 95% identity in 86 aa overlap. (86 aa) |
| | STY2833 | RNA polymerase sigma-E factor (sigma-24); Sigma factors are initiation factors that promote the attachment of RNA polymerase (RNAP) to specific initiation sites and are then released. Extracytoplasmic function (ECF) sigma-E controls the envelope stress response, responding to periplasmic protein stress, increased levels of periplasmic lipopolysaccharide (LPS) as well as acid stress, heat shock and oxidative stress; it controls protein processing in the extracytoplasmic compartment (By similarity). (191 aa) |
| | STY2932 | Ribonucleoside-diphosphate reductase 2 alpha chain; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides. (714 aa) |
| | STY2933 | Ribonucleoside-diphosphate reductase 2 beta chain; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides; Belongs to the ribonucleoside diphosphate reductase small chain family. (319 aa) |
| | STY2946 | Similar to e.g. Haemophilus influenzae hypothetical protein HI0488 SW:YQAB_HAEIN (P44004) (200 aa) fasta scores: E(): 3.1e-28, 40.6% id in 187 aa and Neisseria meningitidis beta-phosphoglucomutase pgm2 or NMA2093 TR:CAB85309 (EMBL:UNNKOWN ACCESSION) (221 aa) fasta scores: E(): 2.4e-13, 31.8% id in 192 aa; Fasta hit to PGMB_ECOLI (219 aa), 30% identity in 189 aa overlap; Fasta hit to YNIC_ECOLI (222 aa), 30% identity in 184 aa overlap; Orthologue of E. coli YQAB_ECOLI; Fasta hit to YQAB_ECOLI (188 aa), 88% identity in 188 aa overlap. (188 aa) |
| | STY2950 | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (353 aa) |
| | STY2963 | Putative rubredoxin reductase; One of at least two accessory proteins for anaerobic nitric oxide (NO) reductase. Reduces the rubredoxin moiety of NO reductase. (377 aa) |
| | STY2969 | Formate hydrogenlyase subunit 7; Fasta hit to HYFI_ECOLI (252 aa), 62% identity in 250 aa overlap; Orthologue of E. coli hycG (HYCG_ECOLI); Fasta hit to HYCG_ECOLI (255 aa), 97% identity in 255 aa overlap. (255 aa) |
| | STY2971 | Formate hydrogenlyase subunit 5; Fasta hit to HYFG_ECOLI (555 aa), 72% identity in 563 aa overlap; Orthologue of E. coli hycE (HYCE_ECOLI); Fasta hit to HYCE_ECOLI (569 aa), 97% identity in 569 aa overlap. (569 aa) |
| | STY2976 | HypA protein; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. (118 aa) |
| | STY2977 | Hydrogenase isoenzymes formation protein HypB; Orthologue of E. coli hypB (HYPB_ECOLI); Fasta hit to HYPB_ECOLI (290 aa), 95% identity in 290 aa overlap. (290 aa) |
| | sprB | Similar to Salmonella typhimurium transcriptional regulator SprB found on pathogenicity island 1 TR:Q9XC53 (EMBL:AF148689) (251 aa) fasta scores: E(): 0, 99.2% id in 251 aa. (251 aa) |
| | STY3033 | DNA mismatch repair protein; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity (By similarity). (855 aa) |
| | cysC | Adenosine 5-phosphosulfate kinase; Catalyzes the synthesis of activated sulfate. (201 aa) |
| | cysN | ATP sulfurylase (ATP:sulfate adenyltransferase) subunit; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily. (479 aa) |
| | cysD | ATP sulfurylase (ATP:sulfate adenyltransferase); Orthologue of E. coli cysD (CYSD_ECOLI); Fasta hit to CYSD_ECOLI (302 aa), 97% identity in 302 aa overlap. (302 aa) |
| | STY3081 | Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis. (432 aa) |
| | recD | Exonuclease V alpha-subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Hol [...] (611 aa) |
| | recB | Exonuclease V subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzym [...] (1181 aa) |
| | recC | Exonuclease V subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzym [...] (1123 aa) |
| | STY3200 | Site-specific integrase/recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Binds cooperatively to specific DNA consensus sequences that are separated from XerC binding sites by a short central region, forming the heterotetrameric XerC-XerD complex that recombines DNA substrates. The complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. In the complex XerD specifically e [...] (298 aa) |
| | STY3209 | Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. (957 aa) |
| | STY3210 | Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. (130 aa) |
| | STY3211 | Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine. (364 aa) |
| | STY3264 | Conserved hypothetical protein; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family. (239 aa) |
| | STY3315 | Hydrogenase-2 component protein; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. (113 aa) |
| | STY3318 | Hydrogenase-2 large subunit; Fasta hit to MBHL_ECOLI (597 aa), 43% identity in 595 aa overlap; Orthologue of E. coli hybC (MBHM_ECOLI); Fasta hit to MBHM_ECOLI (566 aa), 94% identity in 566 aa overlap; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family. (567 aa) |
| | STY3319 | Probable hydrogenase-2 cytochrome b subunit; Orthologue of E. coli hybB (HYBB_ECOLI); Fasta hit to HYBB_ECOLI (392 aa), 96% identity in 392 aa overlap. Contains multiple possible membrane spanning hydrophobic domains. (392 aa) |
| | STY3320 | Hydrogenase-2 small subunit; Fasta hit to FDNH_ECOLI (294 aa), 32% identity in 305 aa overlap; Orthologue of E. coli hybA (HYBA_ECOLI); Fasta hit to HYBA_ECOLI (328 aa), 95% identity in 328 aa overlap. (328 aa) |
| | hyb0 | Similar to Escherichia coli hydrogenase-2 small chain precursor Hyb0 SW:MBHT_ECOLI (Q46847) (372 aa) fasta scores: E(): 0, 96.8% id in 372 aa. Contains multiple possible membrane spanning hydrophobic domains. (372 aa) |
| | STY3389 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (581 aa) |
| | STY3390 | RNA polymerase sigma-70 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (660 aa) |
| | STY3463 | Polynucleotide phosphorylase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (711 aa) |
| | STY3499 | RNA polymerase sigma-54 factor (sigma-N); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (477 aa) |
| | STY3510 | Similar to Escherichia coli glutamate synthase [NADPH] large chain precursor GltB SW:GLTB_ECOLI (P09831) (1517 aa) fasta scores: E(): 0, 95.4% id in 1486 aa and to Pseudomonas aeruginosa glutamate synthase large subunit GltB TR:P95456 (EMBL:U81261) (1482 aa) fasta scores: E(): 0, 60.9% id in 1476 aa. (1486 aa) |
| | STY3511 | Glutamate synthase (NADPH) small chain; Fasta hit to P76440 (412 aa), 33% identity in 443 aa overlap; Orthologue of E. coli gltD (GLTD_ECOLI); Fasta hit to GLTD_ECOLI (471 aa), 95% identity in 471 aa overlap. (472 aa) |
| | STY3522 | Stringent starvation protein B; Orthologue of E. coli sspB (SSPB_ECOLI); Fasta hit to SSPB_ECOLI (165 aa), 89% identity in 167 aa overlap. (166 aa) |
| | oadA-2 | Similar to Salmonella typhimurium oxaloacetate decarboxylase alpha chain OadA SW:DCOA_SALTY (Q03030) (590 aa) fasta scores: E(): 0, 98.6% id in 590 aa. (591 aa) |
| | tldD | TldD protein; Similar to Escherichia coli protein TldD which suppresses the inhibitory activity of the carbon storage regulator CsrA SW:TLDD_ECOLI (P46473) (481 aa) fasta scores: E(): 0, 94.4% id in 481 aa. (481 aa) |
| | STY3559 | Biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (156 aa) |
| | STY3560 | Biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (449 aa) |
| | STY3608 | DNA helicase II; Fasta hit to REP_ECOLI (673 aa), 38% identity in 666 aa overlap; Orthologue of E. coli uvrD (UVRD_ECOLI); Fasta hit to UVRD_ECOLI (720 aa), 98% identity in 720 aa overlap. (720 aa) |
| | STY3610 | Integrase/recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Binds cooperatively to specific DNA consensus sequences that are separated from XerD binding sites by a short central region, forming the heterotetrameric XerC-XerD complex that recombines DNA substrates. The complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. In the complex XerC specifically exchanges the t [...] (300 aa) |
| | rhlB | Putative ATP-dependent RNA helicase; DEAD-box RNA helicase involved in RNA degradation. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. Belongs to the DEAD box helicase family. RhlB subfamily. (421 aa) |
| | STY3655 | Acetohydroxy acid synthase II, small subunit; Orthologue of E. coli ilvM (ILVM_ECOLI); Fasta hit to ILVM_ECOLI (86 aa), 93% identity in 86 aa overlap. (86 aa) |
| | STY3656 | Acetolactate synthase large subunit; Fasta hit to ILVB_ECOLI (562 aa), 47% identity in 554 aa overlap; Fasta hit to ILVI_ECOLI (574 aa), 43% identity in 564 aa overlap; Orthologue of E. coli ilvG_2 (ILVG_ECOLI); Fasta hit to ILVG_ECOLI (548 aa), 92% identity in 548 aa overlap. (548 aa) |
| | STY3723 | Thiamine biosynthesis protein; Fasta hit to MOEB_ECOLI (249 aa), 45% identity in 245 aa overlap; Orthologue of E. coli thiF (THIF_ECOLI); Fasta hit to THIF_ECOLI (251 aa), 87% identity in 251 aa overlap. (252 aa) |
| | thiS | Thiamine biosynthesis protein; Similar to Escherichia coli this protein ThiS SW:THIS_ECOLI (O32583) (66 aa) fasta scores: E(): 6.5e-19, 77.3% id in 66 aa. Note, due to overlap, the translational start site differs from that of E. coli. (57 aa) |
| | STY3725 | Thiamine biosynthesis protein; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. (256 aa) |
| | STY3726 | Thiamine biosynthesis protein; Orthologue of E. coli thiH (THIH_ECOLI); Fasta hit to THIH_ECOLI (377 aa), 90% identity in 375 aa overlap. (377 aa) |
| | STY3731 | DNA-directed RNA polymerase, beta'-subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1407 aa) |
| | STY3732 | DNA-directed RNA polymerase, beta-subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1342 aa) |
| | STY3778 | Heat shock protein; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery. Belongs to the peptidase T1B family. HslV subfamily. (176 aa) |
| | STY3779 | Heat shock protein; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. (443 aa) |
| | STY3809 | 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. (320 aa) |
| | fdoG | Highly similar to Escherichia coli formate dehydrogenase-O, major subunit fdoG SW:FDOG_ECOLI (P32176; P78131) (1016 aa). Contains a stop codon (codon 196) which is encoded as a selenocysteine by the opal codon UGA. (1016 aa) |
| | STY3841 | Formate dehydrogenase-O beta subunit; The beta chain is an electron transfer unit containing 4 cysteine clusters involved in the formation of iron-sulfur centers. (300 aa) |
| | STY3842 | Formate dehydrogenase-O gamma subunit; Fasta hit to FDNI_ECOLI (217 aa), 49% identity in 214 aa overlap; Orthologue of E. coli fdoI (FDOI_ECOLI); Fasta hit to FDOI_ECOLI (211 aa), 96% identity in 211 aa overlap. (211 aa) |
| | STY3939 | RNase P, protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. (119 aa) |
| | STY3941 | DNA polymerase III beta-subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] (366 aa) |
| | STY3956 | trimethylamine-N-oxide reductase precursor; Reduces trimethylamine-N-oxide (TMAO) into trimethylamine; an anaerobic reaction coupled to energy-yielding reactions. (850 aa) |
| | STY3986 | Acetohydroxy acid synthase I, small subunit; Fasta hit to ILVG_ECOLI (548 aa), 46% identity in 550 aa overlap; Fasta hit to GCL_ECOLI (592 aa), 35% identity in 507 aa overlap; Fasta hit to ILVI_ECOLI (574 aa), 40% identity in 566 aa overlap; Orthologue of E. coli ilvB (ILVB_ECOLI); Fasta hit to ILVB_ECOLI (562 aa), 92% identity in 562 aa overlap. (562 aa) |
| | STY3987 | Acetohydroxy acid synthase I, small subunit; Orthologue of E. coli ilvN (ILVN_ECOLI); Fasta hit to ILVN_ECOLI (96 aa), 90% identity in 96 aa overlap. (96 aa) |
| | STY4048 | ATP-dependent DNA helicase; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. (693 aa) |
| | rpoZ | DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits (By similarity). (91 aa) |
| | STY4060 | RNase PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. (238 aa) |
| | STY4064 | Conserved hypothetical protein; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family. (407 aa) |
| | radC | Similar to Escherichia coli DNA repair protein RadC radC SW:RADC_ECOLI (P25531) (222 aa) fasta scores: E(): 0, 83.7% id in 215 aa, and to Haemophilus influenzae DNA repair protein SW:RADC_HAEIN (P44952) (234 aa) fasta scores: E(): 0, 51.2% id in 217 aa; Belongs to the UPF0758 family. YicR subfamily. (221 aa) |
| | gpsA | Similar to Escherichia coli glycerol-3-phosphate dehydrogenase [NAD+] gpsA SW:GPDA_ECOLI (P37606) (339 aa) fasta scores: E(): 0, 95.0% id in 339 aa, and to Bacillus subtilis glycerol-3-phosphate dehydrogenase [NAD gpsA or glyC SW:GPDA_BACSU (P46919) (345 aa) fasta scores: E(): 0, 38.4% id in 331 aa; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. (339 aa) |
| | cysE | Similar to Escherichia coli serine acetyltransferase cysE SW:CYSE_ECOLI (P05796) (273 aa) fasta scores: E(): 0, 95.6% id in 273 aa; Belongs to the transferase hexapeptide repeat family. (273 aa) |
| | STY4143 | glycine-tRNA synthetase, alpha subunit; Orthologue of E. coli glyQ (SYGA_ECOLI); Fasta hit to SYGA_ECOLI (303 aa), 99% identity in 303 aa overlap. (303 aa) |
| | STY4144 | glycine-tRNA synthetase, beta subunit; Orthologue of E. coli glyS (SYGB_ECOLI); Fasta hit to SYGB_ECOLI (688 aa), 94% identity in 688 aa overlap. (689 aa) |
| | STY4156 | Putative 2-hydroxyacid dehydrogenase; Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively. Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. GhrB subfamily. (324 aa) |
| | yhhP | Conserved hypothetical protein; Sulfur carrier protein involved in sulfur trafficking in the cell. Part of a sulfur-relay system required for 2-thiolation during synthesis of 2-thiouridine of the modified wobble base 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) in tRNA. Interacts with IscS and stimulates its cysteine desulfurase activity. Accepts an activated sulfur from IscS, which is then transferred to TusD, and thus determines the direction of sulfur flow from IscS to 2-thiouridine formation. Also appears to be involved in sulfur transfer for the biosynthesis of molybdopterin. (81 aa) |
| | glgC | Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc. (431 aa) |
| | glpD | Similar to Escherichia coli aerobic glycerol-3-phosphate dehydrogenase GlpD SW:GLPD_ECOLI (P13035) (501 aa) fasta scores: E(): 0, 90.6% id in 502 aa, and to Pseudomonas tolaasii glycerol-3-phosphate dehydrogenase GlpD SW:GLPD_PSETO (O83004) (513 aa) fasta scores: E(): 0, 59.9% id in 491 aa; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family. (502 aa) |
| | yheN | Conserved hypothetical protein; Part of a sulfur-relay system required for 2-thiolation of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE. (128 aa) |
| | yheM | Conserved hypothetical protein; Part of a sulfur-relay system required for 2-thiolation of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. (118 aa) |
| | yheL | Conserved hypothetical protein; Part of a sulfur-relay system required for 2-thiolation of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. (95 aa) |
| | rpoA | DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (329 aa) |
| | uvrA | Excision nuclease subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate; Belongs to the ABC transporter superfamily. UvrA family. (941 aa) |
| | dcuR | Two-component response regulator; Similar to Escherichia coli transcriptional regulatory protein DcuR SW:DCUR_ECOLI (P39271) (239 aa) fasta scores: E(): 0, 88.3% id in 239 aa, and to Bacillus subtilis two-component response regulator CitT TR:O34534 (EMBL:Z99108) (226 aa) fasta scores: E(): 5.2e-19, 31.4% id in 226 aa. Contains helix-turn-helix motif, residues 179 to 200, score 1148 (+3.10 SD). (239 aa) |
| | dmsC | Similar to Yersinia pestis dimethyl sulfoxide reductase subunit C DmsC TR:Q9X6B4 (EMBL:AF135170) (286 aa) fasta scores: E(): 3.6e-16, 34.4% id in 273 aa, and to Escherichia coli anaerobic dimethyl sulfoxide reductase chain C SW:DMSC_ECOLI (P18777) (287 aa) fasta scores: E(): 4.2e-16, 34.3% id in 274 aa. Predicted hydrophobic membrane spanning domains, integral membrane protein. (257 aa) |
| | STY4514 | Putative GerE family regulatory protein; Similar to the N-terminus of Erwinia amylovora RcsB TR:P96320 (EMBL:Y09848) (215 aa) fasta scores: E(): 0.011, 34.4% id in 64 aa, and to Salmonella typhi capsular synthesis regulator component B RcsB SW:RCSB_SALTI (Q56127) (216 aa) fasta scores: E(): 0.019, 36.4% id in 55 aa. (95 aa) |
| | STY4592 | Hypothetical protein; Similar to several including the N-terminus of Escherichia coli DNA primase TraC SW:TRC4_ECOLI (P27189; P27184) (1061 aa) fasta scores: E(): 6e-07, 30.4% id in 293 aa and to Escherichia coli ArdC antirestriction protein ardC TR:Q9R2K1 (EMBL:AF143206) (297 aa) fasta scores: E(): 1.6e-05, 29.9% id in 284 aa. (649 aa) |
| | samB | UV protection protein; Similar to Salmonella typhimurium cryptic 60-MDa plasmid SamB protein SW:SAMB_SALTY (P23832) (424 aa) fasta scores: E(): 0, 89.6% id in 423 aa, and to Shigella flexneri ImpB impB TR:Q9ZA91 (EMBL:AF079316) (423 aa) fasta scores: E(): 0, 71.7% id in 421 aa; Paralogue of E. coli umuC (UMUC_ECOLI); Fasta hit to UMUC_ECOLI (422 aa), 63% identity in 420 aa overlap. (424 aa) |
| | STY4637 | Putative exonuclease; Similar to Bacteriophage 186 hypothetical 21.5 kDa protein CP81 SW:CP81_BP186 (P41060) (194 aa) fasta scores: E(): 0, 72.5% id in 193 aa. (194 aa) |
| | STY4664 | Putative DNA helicase; Similar to Escherichia coli helicase IV HelD SW:HELD_ECOLI (P15038) (684 aa) fasta scores: E(): 0.067, 27.5% id in 320 aa and to Salmonella typhi putative DNA helicase TrhI TR:AAF69842 (EMBL:UNNKOWN ACCESSION) (594 aa) fasta scores: E(): 0.24, 19.4% id in 454 aa. (503 aa) |
| | pmbA | Similar to Escherichia coli protein PmbA or TldE SW:PMBA_ECOLI (P24231) (450 aa) fasta scores: E(): 0, 95.8% id in 450 aa. (450 aa) |
| | pyrI | Aspartate carbamoyltransferase regulatory subunit; Involved in allosteric regulation of aspartate carbamoyltransferase. (153 aa) |
| | pyrB | Similar to Salmonella typhimurium aspartate carbamoyltransferase catalytic chain PyrB SW:PYRB_SALTY (P08420) (309 aa) fasta scores: E(): 0, 98.4% id in 310 aa, and to Escherichia coli aspartate carbamoyltransferase catalytic chain PyrB SW:PYRB_ECOLI (P00479) (310 aa) fasta scores: E(): 0, 95.2% id in 310 aa; Fasta hit to OTC2_ECOLI (333 aa), 32% identity in 298 aa overlap; Fasta hit to OTC1_ECOLI (333 aa), 32% identity in 295 aa overlap. (311 aa) |
| | STY4803 | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family. (334 aa) |
| | STY4807 | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family. (334 aa) |
| | holC | Similar to Escherichia coli DNA polymerase III, chi subunit HolC SW:HOLC_ECOLI (P28905) (147 aa) fasta scores: E(): 0, 95.2% id in 147 aa and to Haemophilus influenzae DNA polymerase III, chi subunit HolC SW:HOLC_HAEIN (P43749) (144 aa) fasta scores: E(): 1.4e-26, 48.6% id in 142 aa. (160 aa) |
| | cI-3 | C-terminus similarity to Bacteriophage P4 ash protein cI SW:VASH_BPP4 (P05462) (137 aa) fasta scores: E(): 8.3e-29, 73.1% id in 108 aa, and to Bacteriophage N15 secondary immunity repressor ca TR:O21968 (EMBL:U63086) (100 aa) fasta scores: E(): 0.00034, 45.9% id in 111 aa. (127 aa) |
| | STY4832 | Similar to Bacteriophage P4 putative P4-specific DNA primase alpha SW:PRIM_BPP4 (P10277) (777 aa) fasta scores: E(): 0, 86.2% id in 774 aa, and to Haemophilus influenzae phage phi-R73 primase-like protein TR:AAF27348 (EMBL:Q9L8P2) (589 aa) fasta scores: E(): 0, 37.5% id in 432 aa. (777 aa) |
| | hsdS | Subunit S of type I restriction-modification system; Similar to Salmonella typhimurium type I restriction enzyme StysJI specificity protein HsdS SW:T1S_SALTY (P06187) (469 aa) fasta scores: E(): 0, 42.6% id in 481 aa; Orthologue of E. coli hsdS (T1SK_ECOLI); Fasta hit to T1SK_ECOLI (464 aa), 43% identity in 479 aa overlap. (462 aa) |
| | hsdR | Subunit R of type I restriction-modification system; Similar to Escherichia coli type i restriction enzyme ecok i r protein hsdr or hsR SW:T1R_ECOLI (P08956) (1188 aa) fasta scores: E(): 0, 91.9% id in 1169 aa. (1169 aa) |
| | holD | DNA polymerase III, psi subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is unknown. (145 aa) |
| | rimI | Ribosomal-protein-alanine acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18. (148 aa) |
| | nadR | Conserved hypothetical transcriptional regulator; Bifunctional protein. DNA binding, contains helix-turn-helix. Transporter, interacts with NcuC transporting NMN into the cell. Similar to Salmonella typhimurium transcriptional regulator NadR SW:NADR_SALTY (P24518) (409 aa) fasta scores: E(): 0, 98.8% id in 410 aa, and to Escherichia coli transcriptional regulator NadR SW:NADR_ECOLI (P27278; P76819) (410 aa) fasta scores: E(): 0, 94.6% id in 409 aa. (410 aa) |
