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PFL_4304 PFL_4304 PFL_0165 PFL_0165 PFL_0368 PFL_0368 typA typA pilQ pilQ PFL_0621 PFL_0621 PFL_0663 PFL_0663 PFL_0697 PFL_0697 PFL_1466 PFL_1466 PFL_1551 PFL_1551 fliI fliI fliP fliP fliQ fliQ flhB flhB flhA flhA PFL_1678 PFL_1678 rbsC rbsC PFL_2132 PFL_2132 pedD pedD PFL_2748 PFL_2748 gspH gspH gspI gspI gspG gspG PFL_2753 PFL_2753 gspL gspL PFL_2755 PFL_2755 gspD gspD gspF gspF PFL_2761 PFL_2761 PFL_2812 PFL_2812 PFL_2820 PFL_2820 fitB fitB PFL_3000 PFL_3000 PFL_3004 PFL_3004 PFL_3126 PFL_3126 PFL_3896 PFL_3896 PFL_3925 PFL_3925 PFL_3926 PFL_3926 lon_1 lon_1 PFL_4236 PFL_4236 pilN-2 pilN-2 PFL_4679 PFL_4679 traD traD pilC pilC PFL_5316 PFL_5316 hasD hasD secE secE PFL_5898 PFL_5898 tssM tssM tssL tssL tssK tssK tssJ tssJ tssA tssA tssB tssB tssC tssC tssF tssF tssG tssG vgrG vgrG PFL_6209 PFL_6209
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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PFL_4304Competence protein ComEA helix-hairpin-helix repeat protein; Identified by match to protein family HMM TIGR00426. (109 aa)
PFL_0165Conserved hypothetical protein. (105 aa)
PFL_0368Processing peptidase domain protein; Identified by match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; Belongs to the peptidase S41A family. (436 aa)
typAGTP-binding protein TypA; Identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394. (606 aa)
pilQType IV pilus biogenesis protein PilQ; Identified by similarity to SP:P34750; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660; match to protein family HMM TIGR02515. (583 aa)
PFL_0621Hemolysin secretion/activation protein, ShlB/FhaC/HecB family; Identified by similarity to GB:AAZ57197.1; match to protein family HMM PF03865; match to protein family HMM PF08479. (567 aa)
PFL_0663Membrane protein, MarC family; Identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427. (198 aa)
PFL_0697Type II and III secretion system protein; Identified by match to protein family HMM PF00263; Belongs to the bacterial secretin family. (417 aa)
PFL_1466Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244; match to protein family HMM PF08479. (583 aa)
PFL_1551Hemolysin secretion/activation protein, ShlB family; Identified by match to protein family HMM PF03865; match to protein family HMM PF08479. (580 aa)
fliIFlagellum-specific ATP synthase FliI; Identified by similarity to SP:P26465; match to protein family HMM PF00006; match to protein family HMM TIGR01026; match to protein family HMM TIGR03496. (452 aa)
fliPFlagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family. (249 aa)
fliQFlagellar biosynthetic protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family. (89 aa)
flhBFlagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family. (378 aa)
flhAFlagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family. (709 aa)
PFL_1678Conserved hypothetical protein. (109 aa)
rbsCRibose ABC transporter, permease protein; Identified by similarity to SP:P0AGI1; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family. (324 aa)
PFL_2132Identified by match to protein family HMM PF00805. (146 aa)
pedDPentapeptide repeat protein PedD; Identified by similarity to GB:ABR57221.1; match to protein family HMM PF00805. (219 aa)
PFL_2748Putative general secretion pathway protein J; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532. (203 aa)
gspHGeneral secretion pathway protein H; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR01708; match to protein family HMM TIGR02532. (153 aa)
gspIGeneral secretion pathway protein I; Identified by similarity to GB:AAD05179.1; match to protein family HMM PF02501; match to protein family HMM PF07963; match to protein family HMM TIGR01707; match to protein family HMM TIGR02532. (128 aa)
gspGGeneral secretion pathway protein G; Identified by match to protein family HMM PF07963; match to protein family HMM PF08334; match to protein family HMM TIGR01710; match to protein family HMM TIGR02532. (149 aa)
PFL_2753Putative general secretion pathway protein K; Identified by match to protein family HMM PF03934. (326 aa)
gspLGeneral secretion pathway protein L; Identified by match to protein family HMM PF05134; match to protein family HMM TIGR01709. (404 aa)
PFL_2755General secretion pathway protein M; Identified by match to protein family HMM PF04612. (188 aa)
gspDGeneral secretion pathway protein D; Identified by match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02517. (794 aa)
gspFGeneral secretion pathway protein F; Identified by match to protein family HMM PF00482; match to protein family HMM TIGR02120. (403 aa)
PFL_2761Identified by match to protein family HMM PF05860; match to protein family HMM TIGR01901. (4187 aa)
PFL_2812Type VI secretion system Vgr family protein; Identified by match to protein family HMM PF04524; match to protein family HMM TIGR01646; match to protein family HMM TIGR03361. (394 aa)
PFL_2820Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF08479. (570 aa)
fitBType I secretion membrane fusion protein FitB; See Pechy-Tarr et. al. (PMID: 18484997) for more information; identified by similarity to GB:ABY91228.1; match to protein family HMM PF00529; match to protein family HMM TIGR01843. (462 aa)
PFL_3000Conserved hypothetical protein. (361 aa)
PFL_3004Type VI secretion system Vgr family protein; Identified by match to protein family HMM PF04524; match to protein family HMM PF06715; match to protein family HMM TIGR01646; match to protein family HMM TIGR03361. (749 aa)
PFL_3126Phospholipase C, phosphocholine-specific; Identified by match to protein family HMM PF04185; match to protein family HMM PF05506; match to protein family HMM TIGR03396. (715 aa)
PFL_3896Type II/III secretion system short domain protein; Identified by match to protein family HMM PF03958. (251 aa)
PFL_3925Conserved hypothetical protein; Identified by match to protein family HMM PF04357. (1225 aa)
PFL_3926Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103; match to protein family HMM PF07244. (575 aa)
lon_1Endopeptidase La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. (798 aa)
PFL_4236Hemolysin secretion/activation protein, ShlB family; Identified by match to protein family HMM PF03865; match to protein family HMM PF08479. (574 aa)
pilN-2Type IV pilus protein, PilN; Identified by similarity to GB:AAP22528.1; match to protein family HMM PF00263; match to protein family HMM PF07655; match to protein family HMM TIGR02520. (613 aa)
PFL_4679Type IV pilus biogenesis protein; Identified by match to protein family HMM PF00482. (388 aa)
traDConjugative coupling factor TraD, PFGI-1 class; Identified by match to protein family HMM TIGR03754. (738 aa)
pilCType IV pilus biogenesis protein PilC; Identified by similarity to GB:AAA25733.1; match to protein family HMM PF00482. (405 aa)
PFL_5316Putative pilin; Identified by similarity to GB:AAP81272.1; match to protein family HMM PF07963; match to protein family HMM TIGR02532. (156 aa)
hasDType 1 secretion system ATPase HasD; Identified by similarity to GB:BAA88492.1; match to protein family HMM PF00005; match to protein family HMM TIGR01842. (598 aa)
secEPreprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation; Belongs to the SecE/SEC61-gamma family. (122 aa)
PFL_5898Conserved hypothetical protein; Identified by match to protein family HMM PF05742. (248 aa)
tssMType VI secretion protein TssM; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03467.1; match to protein family HMM PF06744; match to protein family HMM PF06761; match to protein family HMM TIGR03348. (1168 aa)
tssLType VI secretion protein TssL; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03468.1; match to protein family HMM PF00691; match to protein family HMM TIGR03349; match to protein family HMM TIGR03350. (441 aa)
tssKType VI secretion protein TssK; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03469.1; match to protein family HMM PF05936; match to protein family HMM TIGR03353. (444 aa)
tssJType VI secretion lipoprotein TssJ; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03470.1; match to protein family HMM TIGR03352. (168 aa)
tssAType VI secretion protein TssA; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03472.1; match to protein family HMM PF06812; match to protein family HMM TIGR03363. (339 aa)
tssBType VI secretion protein TssB; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03473.1; match to protein family HMM PF05591; match to protein family HMM TIGR03358. (171 aa)
tssCType VI secretion protein TssC; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03474.1; match to protein family HMM PF05943; match to protein family HMM TIGR03355. (497 aa)
tssFType VI secretion protein TssF; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03478.1; match to protein family HMM PF05947; match to protein family HMM TIGR03359. (619 aa)
tssGType VI secretion protein TssG; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03479.1; match to protein family HMM PF06996; match to protein family HMM TIGR03347. (350 aa)
vgrGType VI secretion protein VgrG; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03481.1; match to protein family HMM PF04524; match to protein family HMM TIGR01646; match to protein family HMM TIGR03361. (645 aa)
PFL_6209PAAR motif containing protein; Identified by match to protein family HMM PF05488. (408 aa)
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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