(19 nodes) Mixed, incl. Sulfur metabolism, and Siroheme metabolic process network (Flavobacterium degerlachei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SDW00038.1	Ferredoxin, 2Fe-2S. (105 aa)
	SDW12092.1	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE. (350 aa)
	SDV99678.1	Thioredoxin; Belongs to the thioredoxin family. (105 aa)
	SDW34980.1	Cysteine desulfurase. (389 aa)
	SDW97838.1	Thioredoxin reductase (NADPH). (350 aa)
	SDW97911.1	Precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase. (196 aa)
	SDW97956.1	uroporphyrinogen-III C-methyltransferase. (264 aa)
	SDW97996.1	Sulfite reductase (ferredoxin); Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. (697 aa)
	SDW98040.1	Sulfate adenylyltransferase subunit 1; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily. (414 aa)
	SDW98079.1	Protein of unknown function. (236 aa)
	SDW98117.1	Sulfate adenylyltransferase subunit 2. (299 aa)
	SDW98163.1	Phosphoadenylylsulfate reductase (thioredoxin); Reduction of activated sulfate into sulfite. (233 aa)
	SDW98242.1	Transcriptional regulator, BadM/Rrf2 family. (136 aa)
	SDX13918.1	Sulfide:quinone oxidoreductase. (424 aa)
	SDX54037.1	Thioredoxin reductase (NADPH). (315 aa)
	SDX68383.1	Sulfide:quinone oxidoreductase. (421 aa)
	SDX87494.1	Hydroxyacylglutathione hydrolase. (467 aa)
	SDX91460.1	Hypothetical protein. (97 aa)
	SDX96350.1	Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase. (139 aa)

Your Current Organism:

Flavobacterium degerlachei

NCBI taxonomy Id: 229203
Other names: DSM 15718, F. degerlachei, Flavobacterium degerlachei Van Trappen et al. 2004, LMG 21915, LMG:21915, NBRC 102677

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDV99678.1	SDW97838.1	SAMN05444338_1015	SAMN05444338_10650	Thioredoxin; Belongs to the thioredoxin family.	Thioredoxin reductase (NADPH).	0.688
SDV99678.1	SDW97996.1	SAMN05444338_1015	SAMN05444338_10653	Thioredoxin; Belongs to the thioredoxin family.	Sulfite reductase (ferredoxin); Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.	0.438
SDV99678.1	SDX54037.1	SAMN05444338_1015	SAMN05444338_111128	Thioredoxin; Belongs to the thioredoxin family.	Thioredoxin reductase (NADPH).	0.977
SDW00038.1	SDW34980.1	SAMN05444338_10127	SAMN05444338_102170	Ferredoxin, 2Fe-2S.	Cysteine desulfurase.	0.944
SDW00038.1	SDW97838.1	SAMN05444338_10127	SAMN05444338_10650	Ferredoxin, 2Fe-2S.	Thioredoxin reductase (NADPH).	0.931
SDW00038.1	SDW97996.1	SAMN05444338_10127	SAMN05444338_10653	Ferredoxin, 2Fe-2S.	Sulfite reductase (ferredoxin); Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.	0.829
SDW00038.1	SDX13918.1	SAMN05444338_10127	SAMN05444338_107118	Ferredoxin, 2Fe-2S.	Sulfide:quinone oxidoreductase.	0.680
SDW00038.1	SDX54037.1	SAMN05444338_10127	SAMN05444338_111128	Ferredoxin, 2Fe-2S.	Thioredoxin reductase (NADPH).	0.634
SDW00038.1	SDX87494.1	SAMN05444338_10127	SAMN05444338_11723	Ferredoxin, 2Fe-2S.	Hydroxyacylglutathione hydrolase.	0.599
SDW00038.1	SDX96350.1	SAMN05444338_10127	SAMN05444338_11957	Ferredoxin, 2Fe-2S.	Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase.	0.406
SDW12092.1	SDW34980.1	SAMN05444338_101290	SAMN05444338_102170	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.	Cysteine desulfurase.	0.959
SDW12092.1	SDW97838.1	SAMN05444338_101290	SAMN05444338_10650	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.	Thioredoxin reductase (NADPH).	0.736
SDW12092.1	SDW97996.1	SAMN05444338_101290	SAMN05444338_10653	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.	Sulfite reductase (ferredoxin); Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.	0.946
SDW12092.1	SDW98117.1	SAMN05444338_101290	SAMN05444338_10656	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.	Sulfate adenylyltransferase subunit 2.	0.599
SDW12092.1	SDW98163.1	SAMN05444338_101290	SAMN05444338_10657	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.	Phosphoadenylylsulfate reductase (thioredoxin); Reduction of activated sulfate into sulfite.	0.599
SDW12092.1	SDW98242.1	SAMN05444338_101290	SAMN05444338_10659	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.	Transcriptional regulator, BadM/Rrf2 family.	0.434
SDW12092.1	SDX13918.1	SAMN05444338_101290	SAMN05444338_107118	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.	Sulfide:quinone oxidoreductase.	0.800
SDW12092.1	SDX54037.1	SAMN05444338_101290	SAMN05444338_111128	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.	Thioredoxin reductase (NADPH).	0.736
SDW12092.1	SDX87494.1	SAMN05444338_101290	SAMN05444338_11723	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.	Hydroxyacylglutathione hydrolase.	0.841
SDW12092.1	SDX96350.1	SAMN05444338_101290	SAMN05444338_11957	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.	Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase.	0.824